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Report for CCDS23236.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23236.1 Public Mus musculus 9 Stra6 23 108 98 CCDS HistoryNCBI Gene:20897Re-query CCDS DB by CCDS ID:23236.1Re-query CCDS DB by GeneID:20897See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23236.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034880.9 ENSMUSP00000034880.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034880.9Link to Ensembl Protein Viewer:ENSMUSP00000034880.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000034880Re-query CCDS DB by Protein ID:ENSMUSP00000034880
Original member Current member EBI ENSMUST00000085677.8 ENSMUSP00000082820.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085677.8Link to Ensembl Protein Viewer:ENSMUSP00000082820.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000085677Re-query CCDS DB by Protein ID:ENSMUSP00000082820
Original member Current member EBI ENSMUST00000167479.7 ENSMUSP00000128417.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167479.7Link to Ensembl Protein Viewer:ENSMUSP00000128417.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167479Re-query CCDS DB by Protein ID:ENSMUSP00000128417
Original member Current member EBI ENSMUST00000170397.7 ENSMUSP00000130232.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170397.7Link to Ensembl Protein Viewer:ENSMUSP00000130232.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170397Re-query CCDS DB by Protein ID:ENSMUSP00000130232
Original member Current member NCBI NM_001162475.1 NP_001155947.1 Accepted alive Link to Nucleotide Sequence:NM_001162475.1Link to Protein Sequence:NP_001155947.1Re-query CCDS DB by Nucleotide ID:NM_001162475Re-query CCDS DB by Protein ID:NP_001155947Link to BLAST:NP_001155947.1
Original member Current member NCBI NM_001162476.1 NP_001155948.1 Accepted alive Link to Nucleotide Sequence:NM_001162476.1Link to Protein Sequence:NP_001155948.1Re-query CCDS DB by Nucleotide ID:NM_001162476Re-query CCDS DB by Protein ID:NP_001155948Link to BLAST:NP_001155948.1
Original member Current member NCBI NM_001162479.1 NP_001155951.1 Accepted alive Link to Nucleotide Sequence:NM_001162479.1Link to Protein Sequence:NP_001155951.1Re-query CCDS DB by Nucleotide ID:NM_001162479Re-query CCDS DB by Protein ID:NP_001155951Link to BLAST:NP_001155951.1
Original member Current member NCBI NM_009291.2 NP_033317.2 Accepted alive Link to Nucleotide Sequence:NM_009291.2Link to Protein Sequence:NP_033317.2Re-query CCDS DB by Nucleotide ID:NM_009291Re-query CCDS DB by Protein ID:NP_033317Link to BLAST:NP_033317.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001155947.1 670 O70491 670 99.8507% 0 1
NP_001155948.1 670 O70491 670 99.8507% 0 1
NP_001155951.1 670 O70491 670 99.8507% 0 1
NP_033317.2 670 O70491 670 99.8507% 0 1

Chromosomal Locations for CCDS 23236.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 58135090 58135202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58138980 58139046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58139356 58139441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58140414 58140553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58140859 58140882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58141056 58141222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58142915 58143037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58145461 58145528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58145713 58145792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58145998 58146059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58147462 58147624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58149180 58149255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58150078 58150211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58151161 58151278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58151363 58151464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58151879 58152042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58152445 58152600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58153153 58153322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2013 nt):
ATGGAGTCCCAGGCATCTGAGAATGGAAGCCAGACCTCCTCCGGGGTGACAGATGACTACAGCAGCTGGT
ACATCGAGGAACCTCTAGGAGCTGAGGAGGTGCAGCCAGAGGGGGTGATTCCCCTTTGCCAGCTCACCGC
ACCCCCTGCCCTGCTCCATGCCTGCCTGGCTTCACTGTCGTTCCTGGTTCTGCTGCTGCTGGCCTTGCTG
GTGAGACGGCGCAGGCTTTGGCCACGCTGTGGTCATCGCGGACTTGGACTGCCCAGCCCTGTGGATTTCT
TGGCTGGGGACCTATCCTGGACAGTGCCTGCTGCTGTCTTTGTGGTCCTCTTCAGCAACCTATGCCTGTT
GCTCCCTGATGAGAACCCACTGCCTTTCCTGAACCTCACTGCAGCATCAAGTCCAGATGGAGAGATGGAG
ACATCAAGAGGGCCCTGGAAGCTACTGGCTCTGCTCTACTATCCAGCCCTCTATTACCCTCTGGCTGCTT
GTGCTTCGGCAGGGCACCAAGCTGCATTCCTATTGGGTACTGTGTTATCTTGGGCCCACTTTGGTGTTCA
GGTCTGGCAGAAAGCTGAGTGTCCTCAGGATCCTAAGATCTACAAGCACTACTCCTTGCTGGCCTCCCTG
CCTCTACTTCTGGGTCTTGGATTCCTGAGCCTTTGGTATCCAGTACAACTTGTGCAGAGTCTCCGTCACC
CGACAGGAGCAGGCTCCCAGGGGCTGCAGACCAGCTACTCCGAGAAGTATCTGAGAACTCTTCTCTGCCC
AAAGAAGTTGGATAGCTGCTCCCATCCTGCCTCCAAGCGTAGCCTCCTGTCTCGGGCCTGGGCCTTCTCC
CATCATTCCATCTACACTCCACAGCCAGGATTCCGCCTGCCCTTGAAGCTGGTGATCTCGGCCACCCTGA
CAGGAACAGCCACTTACCAGGTGGCCCTGCTGCTGCTGGTGAGCGTGGTGCCTACTGTGCAGAAGGTGAG
GGCGGGGATCAACACAGATGTCTCCTACCTGCTGGCTGGCTTTGGGATCGTGCTCTCTGAAGACAGGCAG
GAGGTGGTAGAGCTGGTGAAGCATCACCTATGGACTGTGGAAGCATGCTACATCTCAGCTCTGGTCTTGT
CCTGCGCATCAACCTTCCTGCTCCTGATCCGATCCCTGAGGACACACAGGGCCAATCTTCAAGCACTACA
CCGAGGGGCTGCCCTGGATCTGGACCCCCCTCTTCAGAGTATTCATCCCTCTCGCCAAGCCATAGTCAGC
TGGATGAGCTTCTGTGCCTACCAGACGGCCTTCAGCTGCCTTGGGCTCCTGGTGCAGCAGGTCATCTTCT
TCTTGGGGACCACATCCCTGGCCTTCCTGGTGTTTGTGCCTTTACTGCATGGCAGGAACCTCCTGCTGCT
GCGATCCCTGGAATCCACGTGGCCCTTCTGGCTGACTGTGGCCTTAGCTGTAATCCTGCAGAACATAGCA
GCCAACTGGATCTTCCTGAGGACTCACCATGGATACCCAGAGCTGACCAACCGGCGCATGCTCTGCGTAG
CTACTTTTCTCCTCTTCCCCATCAACATGCTGGTGGGAGCCATAATGGCTGTCTGGCGGGTGCTCATCTC
TTCTCTCTACAACACTGTTCACCTCGGCCAGATGGACCTCAGCCTGCTGCCGCAGAGGGCAGCCTCCCTG
GATCCAGGCTACCACACATACCAAAACTTCCTGAGGATTGAGGCCAGCCAGTCACATCCAGGAGTCATAG
CCTTCTGTGCCCTGCTCCTCCATGCTCCAAGTCCACAGCCCCGGCCCCCATTGGCCCCTCAGGACAGCCT
CAGGCCGGCAGAAGAAGAAGAAGGGATGCAGTTGCTACAGACCAAGGACCTGATGGCCAAGGGAGCAGGA
CACAAAGGCAGCCAGAGCAGGGCCCGCTGGGGTCTGGCCTACACATTGCTCCACAATCCAAGCCTACAGG
CCTTCCGGAAGGCAGCCCTTACTAGTGCCAAGGCCAATGGCACCCAGCCCTGA

Translation (670 aa):
MESQASENGSQTSSGVTDDYSSWYIEEPLGAEEVQPEGVIPLCQLTAPPALLHACLASLSFLVLLLLALL
VRRRRLWPRCGHRGLGLPSPVDFLAGDLSWTVPAAVFVVLFSNLCLLLPDENPLPFLNLTAASSPDGEME
TSRGPWKLLALLYYPALYYPLAACASAGHQAAFLLGTVLSWAHFGVQVWQKAECPQDPKIYKHYSLLASL
PLLLGLGFLSLWYPVQLVQSLRHPTGAGSQGLQTSYSEKYLRTLLCPKKLDSCSHPASKRSLLSRAWAFS
HHSIYTPQPGFRLPLKLVISATLTGTATYQVALLLLVSVVPTVQKVRAGINTDVSYLLAGFGIVLSEDRQ
EVVELVKHHLWTVEACYISALVLSCASTFLLLIRSLRTHRANLQALHRGAALDLDPPLQSIHPSRQAIVS
WMSFCAYQTAFSCLGLLVQQVIFFLGTTSLAFLVFVPLLHGRNLLLLRSLESTWPFWLTVALAVILQNIA
ANWIFLRTHHGYPELTNRRMLCVATFLLFPINMLVGAIMAVWRVLISSLYNTVHLGQMDLSLLPQRAASL
DPGYHTYQNFLRIEASQSHPGVIAFCALLLHAPSPQPRPPLAPQDSLRPAEEEEGMQLLQTKDLMAKGAG
HKGSQSRARWGLAYTLLHNPSLQAFRKAALTSAKANGTQP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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