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Report for CCDS23237.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23237.1 Public Mus musculus 9 Islr 23 108 98 CCDS HistoryNCBI Gene:26968Re-query CCDS DB by CCDS ID:23237.1Re-query CCDS DB by GeneID:26968See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23237.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041477.14 ENSMUSP00000045142.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041477.14Link to Ensembl Protein Viewer:ENSMUSP00000045142.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000041477Re-query CCDS DB by Protein ID:ENSMUSP00000045142
Original member Current member EBI ENSMUST00000168864.3 ENSMUSP00000126963.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168864.3Link to Ensembl Protein Viewer:ENSMUSP00000126963.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000168864Re-query CCDS DB by Protein ID:ENSMUSP00000126963
Original member Current member NCBI NM_001195431.1 NP_001182360.1 Accepted alive Link to Nucleotide Sequence:NM_001195431.1Link to Protein Sequence:NP_001182360.1Re-query CCDS DB by Nucleotide ID:NM_001195431Re-query CCDS DB by Protein ID:NP_001182360Link to BLAST:NP_001182360.1
Original member Current member NCBI NM_012043.4 NP_036173.1 Accepted alive Link to Nucleotide Sequence:NM_012043.4Link to Protein Sequence:NP_036173.1Re-query CCDS DB by Nucleotide ID:NM_012043Re-query CCDS DB by Protein ID:NP_036173Link to BLAST:NP_036173.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001182360.1 428 Q6GU68 428 100% 0 0
NP_036173.1 428 Q6GU68 428 100% 0 0

Chromosomal Locations for CCDS 23237.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 58156936 58158222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1287 nt):
ATGCGGGCACTGTGCCTGCTTTGTTGGGCTGTTCTCCTGAACCTGGTGCGAGCTTGTCCAGAGCCCTGTG
ACTGTGGGGAGAAGTATGGCTTCCAGATTGCAGACTGTGCCTATCGTGACCTAGAGGGTGTGCCACCGGG
CTTCCCGGCCAATGTGACCACACTGAGCCTGTCAGCCAACAGGCTGCCAGGCCTGCCGGAGGGAGCCTTC
AGGGAAGTGCCCCTATTGCAGTCGCTGTGGCTGGCACACAATGAGATCCGCTCGGTGGCTATTGGTGCTC
TGGCCCCTCTGAGCCATCTCAAGAGTCTGGACCTCAGCCACAACCTCCTCTCTGAGTTTGCCTGGAGCGA
CCTGCACAACCTCAGCGCTCTGCAGCTGCTCAAGATGGACAGCAACGAGTTAGCCTTCATCCCTCGGGAC
GCCTTTAGCAGCCTCAGCGCCCTGCGTTCCCTGCAGCTCAACCACAACCGCCTGCACGCGTTGGCCGAGG
GCACCTTCGCACCGCTCACCGCGCTGTCCCACTTGCAGATCAATGACAACCCTTTCGACTGCACCTGTGG
CATCGTGTGGTTCAAGACATGGGCCCTGGCCTCAGCGGTGTCTATTCCAGAACAGGACAACATTGCCTGT
ACTACACCCCACGTCCTGAAGGGTATCCCACTAGGCCGCCTGCCACCCCTGCCCTGCTCAGCTCCCTCAG
TGCAACTAAGCTACCAGCCCAGCCAAGATGGAGCAGAGCTACGGCCTGGCTTCGTGCTGGCACTCCACTG
TGACGTGGATGGACAGCCAGTCCCCCAGCTCCATTGGCACATTCACACCCCGGGCGGCACGGTGGAGATC
GCCAGTCCTAATGTAGGCACTGATGGACGTGCCCTGCCTGGTGCCCTTGCAACCAGTGGGCAGCCACGCT
TCCAGGCCTTTGCCAATGGCAGCCTGCTTATCCCTGACTTTGGCAAGCTGGAGGAGGGCACCTATAGCTG
CCTGGCCACCAATGAGCTAGGCAGTGCCGAAAGCTCTGTAAATGTGGCATTGGCCACCCCAGGTGAGGGG
GGAGAGGATGCTGTGGGGCACAAGTTCCATGGCAAAGCAGTGGAGGGCAAGGGCTGCTATACGGTTGACA
ACGAGGTACAGCCATCCGGACCGGAAGACAACGTGGTTATCATTTACCTCAGCCGTGCTGGGCCCCCAGA
AGCTGCAATAGCAGCAGACGGGAGGCCTGCGCAGCAGTTCTCTGGCATACTTCTGCTAGGCCAAAGCCTG
CTTGTTCTCTCCTTTTTCTACTTCTAA

Translation (428 aa):
MRALCLLCWAVLLNLVRACPEPCDCGEKYGFQIADCAYRDLEGVPPGFPANVTTLSLSANRLPGLPEGAF
REVPLLQSLWLAHNEIRSVAIGALAPLSHLKSLDLSHNLLSEFAWSDLHNLSALQLLKMDSNELAFIPRD
AFSSLSALRSLQLNHNRLHALAEGTFAPLTALSHLQINDNPFDCTCGIVWFKTWALASAVSIPEQDNIAC
TTPHVLKGIPLGRLPPLPCSAPSVQLSYQPSQDGAELRPGFVLALHCDVDGQPVPQLHWHIHTPGGTVEI
ASPNVGTDGRALPGALATSGQPRFQAFANGSLLIPDFGKLEEGTYSCLATNELGSAESSVNVALATPGEG
GEDAVGHKFHGKAVEGKGCYTVDNEVQPSGPEDNVVIIYLSRAGPPEAAIAADGRPAQQFSGILLLGQSL
LVLSFFYF


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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