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Report for CCDS23401.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23401.1 Public Mus musculus 9 Tbc1d2b 23 108 98 CCDS HistoryNCBI Gene:67016Re-query CCDS DB by CCDS ID:23401.1Re-query CCDS DB by GeneID:67016See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23401.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041767.13 ENSMUSP00000045413.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041767.13Link to Ensembl Protein Viewer:ENSMUSP00000045413.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000041767Re-query CCDS DB by Protein ID:ENSMUSP00000045413
Original member NCBI NM_194334.2 NP_919315.2 Updated not alive Link to Nucleotide Sequence:NM_194334.2Link to Protein Sequence:NP_919315.2Re-query CCDS DB by Nucleotide ID:NM_194334Re-query CCDS DB by Protein ID:NP_919315
Current member NCBI NM_194334.3 NP_919315.2 Accepted alive Link to Nucleotide Sequence:NM_194334.3Link to Protein Sequence:NP_919315.2Re-query CCDS DB by Nucleotide ID:NM_194334Re-query CCDS DB by Protein ID:NP_919315Link to BLAST:NP_919315.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_919315.2 965 Q3U0J8 965 100% 0 0

Chromosomal Locations for CCDS 23401.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 90205027 90205222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 90207773 90207894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 90209668 90209853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 90215478 90215595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 90218660 90219154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 90222307 90222500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 90223439 90223549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 90226021 90226404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 90227330 90227574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 90228938 90229101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 90241010 90241178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 90249791 90249944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 90270352 90270711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2898 nt):
ATGCCGGGGGCCGGGGACGGCGTGGAGGAGAGCTGCAGTGGTGGTGAGGGAGCGGTACCGGGAACAGGCT
CGGAGGCTGGGGCGGTGGCGGGACGGGAGCCCTCGCGGCTGTGCGGCTACCTGCAGAAGCTGTCGGGCAA
GGGCCCGTTGCGCGGCTACCGCAGCCGCTGGTTCGTGTTTGACTCGCGCCGCTGCTACCTCTACTACTTC
AAGAGTCCCCAGGACGCTCTGCCGCTCGGCCACCTGGACATCGCCGACGCCTGCTTCAGCTACCAGGGCC
GCGATGAGGCTGCGGAGCCCGGAGCAGATCCGCCCACACACTTCCAGGTGCACAGCGCCGGTGCAGTCAC
CGTGCTCAAGGCTCCTAATCGTGAGCTCATGACTTACTGGCTACAGGAGCTTCAGCAGAAAAGATGGGAA
TATTGCAACAGCCTTGACATGATGAAGTGGGACAGCAGGACTTCCCCGACTCCAGGGGATTTTCCCAAGG
GCCTTGTGGCCAGAGATACCACAGATATAATTTCCCAGCACCCAAATCCTTCTGCAGAAAAAGCCAGAAC
TGTGCTCGCTGTGGAAGCTGCCCCTGGAGAGCTGGTGGGAGACCGGGCTGCTCATCAGCCAGCTCCCGGG
CATCCGAATCCCATCAACTTTTACTCTCTGAAGCAGTGGGGAAATGAGCTCAAAAATTCAATGTCATCAT
TCCGTCCTGGGAGAGGGCACAGTGAGAGTCGCAGGACCGTGTTTTACACCAATGAAGAGTGGGAACTTCT
AGACCCGCCTCCTAAGGACCTGGAGGAGTCCCTGGTACCAGAAGAGAGGAAGAAGCCGATGCCTGAGGGC
AGTAAAGGAGTCGCTAGTTCAGGATTCCCCTTTGAATTTGGACGGAACCCTTACAAAGGAAAGCGCCCCT
TGAAAGATATAATTGGGTCATACAAAAACCGCCACAGCAGTAGTGATCCTTTGCTCGAGGGAACGGCGAC
ATCATCAGGCAGCAGCGGAGGTCCCACTAAGCCAGTCCCCGAAATGCAGCTGCAGATTCAAAGCCAGCAG
GAGGAGCTGGAGCAACTCAAGAAGGACCTATCCAGTCAGAAGGAGCTCATTCGGCTGCTCCAGCAGACAG
TCCGGTCATCCCAATATGACAAGTATTTCACGAACCCCCAGATCAGCCAGGGGGTCCCCGGGGACACACT
GGAGCTCCTGCACCAGAAGGACGAGCAGATCCTGGGCCTCAGCGGCCAGCTGGAGAGGTTCGGCCTGGAG
AAGGAAAGCCTCCAGCAGGAAGTGAGGACGCTGAAGAGCAAGGTGGGCGAGCTCAACGAGCGGCTCGGCA
TGCTGATGGAGACCATCCAGGCCAAGGACGAGGTCATCATCAAGCTCAGCGCCTGTGAGGGCAGCGTGTC
ATCACCCACCCTGGGGCCCAGCTCTCCTTTGGCCATCCCAGCCAGCAAGGACCAGCTGGAGCTGGACAGG
CTAAAAGATAGTCTGCAAGGGTACAAAAGCCAAAATAAATTTCTAAACAAGGAAATTTTGGAACTCTCGG
CTCTACGAAGAAATGCAGAAAGGAGAGAGAGGGATCTGATGGCTAAGTACTCTAGCCTGGAAGCCAAGCT
CTGCCAGGTTGAAAGTAAATACTTGATACTGCTCCAAGAAATGAAGACACCAGTTTGCTCAGAGGAACAG
GGCCCTGCCAGGGATGTCATAGCCCAGTTGTTGGAGGATGCTCTGCAGGTCGAGAGCCAAGAGCAGCCGG
AGCAAGCATTCGTTAAGCCTCATCTGGTCAGTGAGTTTGATATCTACGGGTTTAGGACTGTCCCTGATGA
TGATGAGGAAGAGAAGTTGGTCGCCAAGGTCCGAGCACTGGACCTGAAGACTCTGTACCTCACAGACAAC
CAGGAGGTTTCCACTGGGGTCAAGTGGGAAAACTATTTTGCGAGCACAATGAACAGGGAGATGGCATGCT
CTCCGGAGCTGAAAAACCTGATCCGAGCAGGCATTCCCCACGAGCACCGCTCCAAGGTGTGGAAGTGGTG
TGTTGACCGTCACACCAGGAAGTTCAAGGACAGCATGGAGCCAGACTACTTCCAGACCTTGCTGCAGAAG
GCTCTGGAGAAACAGAACCCGGCCTCCAAGCAGATCGAGCTGGACCTGCTCCGGACTCTGCCCAACAACA
AGCACTACTCCAGCCCCACGTCGGAGGGCATACAGAAGCTGCGCAGTGTCCTGCTCGCCTTCTCCTGGCG
GAATCCCGATATCGGCTACTGCCAAGGCCTGAACAGGTTGGTGGCAGTGGCTCTCCTTTACCTGGATCAA
GAAGATGCCTTCTGGTGTCTCGTTACCATCGTGGAAGTCTTCATGCCCCGAGACTATTACACAAAGACTC
TTTTAGGATCCCAGGTGGACCAGCGGGTGTTCAGAGACCTCCTGAGTGAGAAGCTGCCTCGACTGCACAC
CCATTTTGAACAGTACAAAGTGGACTACACCCTCATCACCTTCAACTGGTTTCTGGTGGTATTTGTGGAC
AGCGTTGTCAGCGACATCCTCTTTAAAATATGGGACTCTTTCCTTTATGAGGGACCAAAGGTTATTTTCC
GTTTTGCCCTGGCACTTTTTAAATATAAGGAAGAGGAGATCCTGAAATTGCAAGATTCGATGTCCATATT
CAAGTATCTGCGTTACTTCACTCGGACTATCCTCGATGCCAGGAAGCTGATCAGCATCTCCTTTGGGGAT
CTGAACCCCTTCCCCCTGCGCCAGATCCGGAACCGGAGAGCCTACCACCTGGAGAAGGTCCGGCTGGAGC
TGACAGAGCTGGAGGCCATTCGAGAGGACTTCCTGCGTGAGCGGGACACTAGCCCTGACAAAGGCGAGCT
AGTTAGCGATGAGGAGGAAGACACTTGA

Translation (965 aa):
MPGAGDGVEESCSGGEGAVPGTGSEAGAVAGREPSRLCGYLQKLSGKGPLRGYRSRWFVFDSRRCYLYYF
KSPQDALPLGHLDIADACFSYQGRDEAAEPGADPPTHFQVHSAGAVTVLKAPNRELMTYWLQELQQKRWE
YCNSLDMMKWDSRTSPTPGDFPKGLVARDTTDIISQHPNPSAEKARTVLAVEAAPGELVGDRAAHQPAPG
HPNPINFYSLKQWGNELKNSMSSFRPGRGHSESRRTVFYTNEEWELLDPPPKDLEESLVPEERKKPMPEG
SKGVASSGFPFEFGRNPYKGKRPLKDIIGSYKNRHSSSDPLLEGTATSSGSSGGPTKPVPEMQLQIQSQQ
EELEQLKKDLSSQKELIRLLQQTVRSSQYDKYFTNPQISQGVPGDTLELLHQKDEQILGLSGQLERFGLE
KESLQQEVRTLKSKVGELNERLGMLMETIQAKDEVIIKLSACEGSVSSPTLGPSSPLAIPASKDQLELDR
LKDSLQGYKSQNKFLNKEILELSALRRNAERRERDLMAKYSSLEAKLCQVESKYLILLQEMKTPVCSEEQ
GPARDVIAQLLEDALQVESQEQPEQAFVKPHLVSEFDIYGFRTVPDDDEEEKLVAKVRALDLKTLYLTDN
QEVSTGVKWENYFASTMNREMACSPELKNLIRAGIPHEHRSKVWKWCVDRHTRKFKDSMEPDYFQTLLQK
ALEKQNPASKQIELDLLRTLPNNKHYSSPTSEGIQKLRSVLLAFSWRNPDIGYCQGLNRLVAVALLYLDQ
EDAFWCLVTIVEVFMPRDYYTKTLLGSQVDQRVFRDLLSEKLPRLHTHFEQYKVDYTLITFNWFLVVFVD
SVVSDILFKIWDSFLYEGPKVIFRFALALFKYKEEEILKLQDSMSIFKYLRYFTRTILDARKLISISFGD
LNPFPLRQIRNRRAYHLEKVRLELTELEAIREDFLRERDTSPDKGELVSDEEEDT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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