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Report for CCDS23451.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23451.1 Public Mus musculus 9 Trf 23 108 98 CCDS HistoryNCBI Gene:22041Re-query CCDS DB by CCDS ID:23451.1Re-query CCDS DB by GeneID:22041See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23451.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035158.15 ENSMUSP00000035158.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035158.15Link to Ensembl Protein Viewer:ENSMUSP00000035158.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000035158Re-query CCDS DB by Protein ID:ENSMUSP00000035158
Original member Current member EBI ENSMUST00000112645.7 ENSMUSP00000108264.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112645.7Link to Ensembl Protein Viewer:ENSMUSP00000108264.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112645Re-query CCDS DB by Protein ID:ENSMUSP00000108264
Original member Current member NCBI NM_133977.2 NP_598738.1 Accepted alive Link to Nucleotide Sequence:NM_133977.2Link to Protein Sequence:NP_598738.1Re-query CCDS DB by Nucleotide ID:NM_133977Re-query CCDS DB by Protein ID:NP_598738Link to BLAST:NP_598738.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598738.1 697 Q921I1 697 100% 0 0

Chromosomal Locations for CCDS 23451.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 103209044 103209078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103210495 103210678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103211812 103211996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103215193 103215257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103215814 103215943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103217363 103217533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103219223 103219255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103219802 103219892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103220893 103221044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103222051 103222228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103222935 103223113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103223584 103223639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103225043 103225175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103225961 103226137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103226838 103226946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103227896 103228068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103230174 103230216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2094 nt):
ATGAGGCTCACCGTGGGTGCCCTGCTGGCCTGCGCTGCCCTGGGGCTGTGTCTGGCTGTCCCTGACAAAA
CGGTCAAATGGTGCGCAGTGTCAGAGCACGAGAATACCAAGTGCATCAGCTTCCGTGACCACATGAAGAC
CGTCCTTCCGCCTGATGGCCCCCGGCTTGCCTGTGTGAAGAAAACCTCCTATCCGGATTGCATCAAGGCC
ATTTCTGCAAGTGAAGCCGATGCTATGACCTTGGATGGGGGTTGGGTGTACGATGCCGGCCTGACTCCGA
ACAACCTGAAGCCCGTGGCGGCGGAGTTTTATGGATCAGTGGAACATCCACAGACCTACTACTACGCTGT
GGCTGTGGTAAAGAAGGGAACAGACTTCCAGCTGAACCAGCTCGAAGGCAAGAAGTCCTGCCACACAGGC
CTGGGAAGGTCTGCAGGCTGGGTCATCCCCATTGGCTTGCTCTTCTGTAAGCTGTCGGAGCCCCGCAGTC
CTCTTGAGAAAGCTGTGTCCAGTTTCTTCTCGGGCAGTTGTGTCCCCTGTGCAGATCCAGTGGCCTTCCC
CAAACTGTGTCAACTGTGCCCAGGCTGTGGCTGCTCCTCCACTCAACCATTCTTTGGCTACGTAGGCGCA
TTCAAGTGTCTGAAAGATGGCGGTGGGGATGTGGCCTTTGTCAAGCACACAACCATATTTGAGGTCTTGC
CGGAGAAGGCTGACAGGGACCAATATGAACTGCTCTGCCTTGACAATACCCGCAAGCCAGTGGATCAGTA
TGAGGATTGCTACCTGGCTCGGATCCCTTCTCATGCTGTTGTGGCTCGAAAAAACAATGGCAAGGAAGAC
TTGATCTGGGAGATTCTCAAAGTGGCACAGGAACACTTTGGCAAAGGCAAATCAAAAGACTTCCAACTGT
TCAGCTCTCCTCTTGGGAAAGACCTGCTGTTTAAAGATTCTGCCTTTGGGCTGTTAAGGGTCCCCCCAAG
GATGGACTACAGGCTGTACCTTGGCCATAACTATGTCACTGCCATTCGGAATCAGCAGGAAGGCGTGTGC
CCGGAGGGCTCGATCGACAACTCGCCAGTGAAGTGGTGTGCACTGAGTCACCTGGAGAGAACCAAGTGTG
ACGAGTGGAGCATCATCAGTGAGGGAAAGATAGAGTGTGAGTCAGCAGAGACCACTGAGGACTGCATTGA
AAAGATTGTGAACGGAGAAGCGGACGCCATGACTTTGGATGGAGGACATGCCTACATTGCAGGCCAGTGT
GGTCTAGTGCCTGTCATGGCAGAGTACTACGAGAGCTCTAATTGTGCCATCCCATCACAACAAGGTATCT
TTCCTAAAGGGTATTATGCCGTGGCTGTGGTGAAGGCATCGGACACTAGCATCACCTGGAACAACCTGAA
AGGCAAGAAGTCCTGCCACACTGGGGTAGACAGAACCGCTGGTTGGAACATCCCTATGGGCATGCTGTAC
AACAGGATCAACCACTGCAAATTCGATGAATTTTTCAGTCAAGGCTGCGCTCCCGGGTATGAGAAGAATT
CCACCCTCTGTGACCTGTGTATTGGCCCACTCAAATGTGCTCCGAACAACAAAGAGGAATATAATGGTTA
CACAGGGGCTTTCAGGTGTCTCGTTGAGAAAGGAGATGTAGCCTTTGTGAAACACCAGACTGTCCTGGAT
AACACCGAAGGAAAGAACCCTGCCGAATGGGCTAAGAATCTGAAGCAGGAAGACTTCGAGTTGCTCTGCC
CTGATGGCACCAGGAAGCCTGTGAAAGATTTTGCCAGCTGCCACCTGGCCCAAGCTCCAAACCATGTTGT
GGTCTCACGAAAAGAGAAGGCAGCCCGGGTTAAGGCTGTACTGACTAGCCAGGAGACTTTATTTGGGGGA
AGTGACTGCACCGGCAATTTCTGTTTGTTCAAGTCCACCACCAAGGACCTTCTGTTCAGGGATGACACCA
AATGTTTCGTTAAACTTCCAGAGGGTACCACACCTGAAAAATACTTAGGAGCGGAGTACATGCAATCTGT
CGGTAACATGAGGAAGTGCTCAACCTCACGACTCCTGGAAGCCTGCACTTTCCACAAACATTAA

Translation (697 aa):
MRLTVGALLACAALGLCLAVPDKTVKWCAVSEHENTKCISFRDHMKTVLPPDGPRLACVKKTSYPDCIKA
ISASEADAMTLDGGWVYDAGLTPNNLKPVAAEFYGSVEHPQTYYYAVAVVKKGTDFQLNQLEGKKSCHTG
LGRSAGWVIPIGLLFCKLSEPRSPLEKAVSSFFSGSCVPCADPVAFPKLCQLCPGCGCSSTQPFFGYVGA
FKCLKDGGGDVAFVKHTTIFEVLPEKADRDQYELLCLDNTRKPVDQYEDCYLARIPSHAVVARKNNGKED
LIWEILKVAQEHFGKGKSKDFQLFSSPLGKDLLFKDSAFGLLRVPPRMDYRLYLGHNYVTAIRNQQEGVC
PEGSIDNSPVKWCALSHLERTKCDEWSIISEGKIECESAETTEDCIEKIVNGEADAMTLDGGHAYIAGQC
GLVPVMAEYYESSNCAIPSQQGIFPKGYYAVAVVKASDTSITWNNLKGKKSCHTGVDRTAGWNIPMGMLY
NRINHCKFDEFFSQGCAPGYEKNSTLCDLCIGPLKCAPNNKEEYNGYTGAFRCLVEKGDVAFVKHQTVLD
NTEGKNPAEWAKNLKQEDFELLCPDGTRKPVKDFASCHLAQAPNHVVVSRKEKAARVKAVLTSQETLFGG
SDCTGNFCLFKSTTKDLLFRDDTKCFVKLPEGTTPEKYLGAEYMQSVGNMRKCSTSRLLEACTFHKH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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