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Report for CCDS23471.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23471.1 Public Mus musculus 9 Ppm1m 23 108 98 CCDS HistoryNCBI Gene:67905Re-query CCDS DB by CCDS ID:23471.1Re-query CCDS DB by GeneID:67905See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23471.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076258.12 ENSMUSP00000075607.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076258.12Link to Ensembl Protein Viewer:ENSMUSP00000075607.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000076258Re-query CCDS DB by Protein ID:ENSMUSP00000075607
Original member Current member NCBI NM_198931.3 NP_945149.2 Accepted alive Link to Nucleotide Sequence:NM_198931.3Link to Protein Sequence:NP_945149.2Re-query CCDS DB by Nucleotide ID:NM_198931Re-query CCDS DB by Protein ID:NP_945149Link to BLAST:NP_945149.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_945149.2 406 Q8BU27-1 406 99.7537% 0 1

Chromosomal Locations for CCDS 23471.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 106195326 106195470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106195787 106195938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106196050 106196157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106196368 106196431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106196593 106196711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106196804 106196888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106197227 106197339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106197742 106197996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106198101 106198224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106198672 106198727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1221 nt):
ATGTATGTCCCACCTCGCACCTCACTTAGGGTTTGGCCTATGCTCTGTGGGATAAGGGTTATCAATGCAG
AAAAATCTGAATTCAACGAAGACCAGGCTGCTTGCGGGAAGCTATGCATCCGGCGATGTGAGTTTGGGAT
CGAAGAACATCAAGAGTGGCTGACGGTGTGCCCAGAGGAGTTCCTGACGGGTCACTACTGGGCACTGTTT
GATGGGCATGGTGGCCCTGCTGCAGCTATCTTGGCTGCCAACACCCTGCACTCTTGCCTTCGCCGGCAGC
TGGAGGCTGTGGTTGAAGGCATGATAGCCCCTCAGCCCCCCATGCACCTCAGTGGCCGCTGTGTCTGCCC
CAGTGACCCCCAGTTCGTGGAGGAAAAGGGGATCCAGGCAGAAGACTTGGTGATCGGGGCTCTGGAGAAC
GCCTTCCAGGAATGTGATGATGTGATTGGGAGAGAGCTGGAGGCCTCAGGACAGGTGGGTGGCTGTACAG
CCCTGGTGGCGGTGTTCCTGCAAGGGAAGCTGTATGTGGCCAATGCTGGGGACAGCAGGGCCATCTTGGT
GCGGAGACATGAGATACGGCAGCTGAGTTCTGAGTTCACCCCAGAAACAGAGCGGCAGCGGATCCAGCAG
CTGGCCTTTACCTACCCTGAGCTTCTGGCTGGAGAGTTCACCCGACTGGAGTTCCCACGGCGGCTAAAGG
GGGATGACTTAGGGCAGAAGGTTTTGTTCAGGGATCATCACATGAGAGGCTGGAGCTACAAACGGGTGGA
AAAGTCTGATCTCAAGTATCCACTGATTCATGGACAGGGTAGGCAGGCGCGGTTACTGGGAACACTGGCT
GTCTCTAGAGGGCTGGGCGACCATCAGCTTAGAGTCCTGGACACCGACATCCAGCTGAAGCCCTTCCTAC
TCTCCATCCCTCAGGTGACTGTGCTGGATGTCCACCAGCTGGCAGTGCAGGAGGAGGATGTGGTTGTCAT
GGCAACTGATGGGCTCTGGGATGTCCTGTCCAATGAGCAGGTGGCACTGCTTGTGCGGAGCTTCCTCACC
GGGAACCAAAAGGATGACCCACACAGGTTCTCAGAGTTGGCCAAAATGCTGATACACAACACTCAAGGAA
AGGACAATGGTGCCACCGGAGAGGGGCAGGTATCCTACGACGATGTCTCCGTGTTTGTGATTCCTTTGCA
CAGCCAGGCCCAAGAAGGCAGTGGCCACTGA

Translation (406 aa):
MYVPPRTSLRVWPMLCGIRVINAEKSEFNEDQAACGKLCIRRCEFGIEEHQEWLTVCPEEFLTGHYWALF
DGHGGPAAAILAANTLHSCLRRQLEAVVEGMIAPQPPMHLSGRCVCPSDPQFVEEKGIQAEDLVIGALEN
AFQECDDVIGRELEASGQVGGCTALVAVFLQGKLYVANAGDSRAILVRRHEIRQLSSEFTPETERQRIQQ
LAFTYPELLAGEFTRLEFPRRLKGDDLGQKVLFRDHHMRGWSYKRVEKSDLKYPLIHGQGRQARLLGTLA
VSRGLGDHQLRVLDTDIQLKPFLLSIPQVTVLDVHQLAVQEEDVVVMATDGLWDVLSNEQVALLVRSFLT
GNQKDDPHRFSELAKMLIHNTQGKDNGATGEGQVSYDDVSVFVIPLHSQAQEGSGH


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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