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Report for CCDS23534.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23534.1 Public Mus musculus 9 Arih2 23 108 98 CCDS HistoryNCBI Gene:23807Re-query CCDS DB by CCDS ID:23534.1Re-query CCDS DB by GeneID:23807See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23534.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000013338.13 ENSMUSP00000013338.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000013338.13Link to Ensembl Protein Viewer:ENSMUSP00000013338.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000013338Re-query CCDS DB by Protein ID:ENSMUSP00000013338
Original member NCBI NM_001357283.1 NP_001344212.1 Updated not alive Link to Nucleotide Sequence:NM_001357283.1Link to Protein Sequence:NP_001344212.1Re-query CCDS DB by Nucleotide ID:NM_001357283Re-query CCDS DB by Protein ID:NP_001344212
Current member NCBI NM_001357283.2 NP_001344212.1 Accepted alive Link to Nucleotide Sequence:NM_001357283.2Link to Protein Sequence:NP_001344212.1Re-query CCDS DB by Nucleotide ID:NM_001357283Re-query CCDS DB by Protein ID:NP_001344212Link to BLAST:NP_001344212.1
Original member Current member NCBI NM_001357285.1 NP_001344214.1 Accepted alive Link to Nucleotide Sequence:NM_001357285.1Link to Protein Sequence:NP_001344214.1Re-query CCDS DB by Nucleotide ID:NM_001357285Re-query CCDS DB by Protein ID:NP_001344214Link to BLAST:NP_001344214.1
Original member NCBI NM_011790.5 NP_035920.1 Updated not alive Link to Nucleotide Sequence:NM_011790.5Link to Protein Sequence:NP_035920.1Re-query CCDS DB by Nucleotide ID:NM_011790Re-query CCDS DB by Protein ID:NP_035920
Current member NCBI NM_011790.6 NP_035920.1 Accepted alive Link to Nucleotide Sequence:NM_011790.6Link to Protein Sequence:NP_035920.1Re-query CCDS DB by Nucleotide ID:NM_011790Re-query CCDS DB by Protein ID:NP_035920Link to BLAST:NP_035920.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344212.1 492 Q9Z1K6 492 100% 0 0
NP_001344214.1 492 Q9Z1K6 492 100% 0 0
NP_035920.1 492 Q9Z1K6 492 100% 0 0

Chromosomal Locations for CCDS 23534.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 108605082 108605153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108605334 108605417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108607288 108607356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108607909 108608052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108608602 108608753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108609778 108609799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108609897 108609947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108611633 108611750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108613726 108613835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108615025 108615146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108616678 108616828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108617372 108617435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108620059 108620126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108644026 108644277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1479 nt):
ATGTCTGTGGACATGAACAGCCAAGGGTCAGATAGCAATGAAGAGGACTATGACCCAAACTGTGAGGAAG
AGGAAGAAGAGGAAGAGGACCCTGGGGACATAGAGGACTACTATGTGGGAGTAGCCAGTGATGTGGAGCA
GCAGGGGGCTGATGCTTTTGATCCTGAAGAGTATCAGTTCACTTGCTTGACCTATAAGGAGTCTGAGGGC
GCCCTCCATGAACATATGACCAGCTTAGCCTCTGTCTTAAAGGTATCTCATTCAGTTGCAAAACTTATAT
TAGTTAATTTCCACTGGCAAGTCTCAGAGATTCTGGACAGGTACAGGTCTAATTCTGCTCAGCTGCTTGT
TGAGGCTCGAGTTCAACCTAATCCATCCAAACATGTCCCCACAGCCCATCCCCCTCACCACTGTGCAGTG
TGTATGCAATTTGTGCGGAAGGAAAACCTACTCTCTCTGGCCTGCCAACATCAGTTTTGCCGAAGCTGTT
GGGAACAGCATTGCTCAGTGCTTGTCAAAGATGGTGTTGGTGTAGGAATCTCATGTATGGCTCAGGATTG
TCCACTTCGAACACCAGAGGACTTTGTATTTCCCTTGCTTCCCAATGAAGAATTGAGAGATAAATACAGG
CGCTACCTCTTTAGGGACTATGTGGAGAGCCATTTCCAGCTCCAGCTGTGCCCCGGTGCAGACTGCCCCA
TGGTTATCCGGGTACAGGAGCCTAGAGCCCGCCGAGTGCAGTGCAATCGGTGCAGCGAGGTCTTCTGTTT
CAAGTGTCGACAGATGTATCACGCCCCCACAGACTGCGCCACAATCCGGAAATGGCTCACCAAGTGTGCA
GACGACTCCGAAACGGCTAACTACATTAGTGCTCACACTAAAGACTGTCCCAAGTGCAACATCTGCATCG
AGAAGAATGGAGGCTGTAATCACATGCAATGCTCCAAGTGTAAGCACGACTTCTGCTGGATGTGTCTAGG
AGACTGGAAGACGCATGGTAGTGAGTACTATGAATGTAGTCGGTACAAGGAGAATCCTGACATTGTCAAC
CAGAGCCAGCAAGCACAGGCCAGGGAGGCCCTCAAGAAGTACTTGTTCTACTTTGAGAGGTGGGAAAATC
ACAACAAAAGCTTGCAGCTGGAGGCACAAACATATGAGCGGATTCACGAGAAGATTCAGGAGAGGGTTAT
GAACAACCTGGGAACTTGGATTGACTGGCAGTACCTACAGAATGCTGCCAAGCTCTTAGCCAAGTGTCGA
TATACCCTGCAGTACACCTATCCATATGCATACTACATGGAATCCGGTCCCAGGAAGAAGCTGTTTGAAT
ACCAGCAGGCTCAGCTGGAGGCTGAGATCGAAAACCTTTCATGGAAAGTTGAGCGTGCAGACAGCTACGA
CAGAGGGGACTTAGAAAACCAGATGCACATAGCAGAGCAGCGGAGGAGAACCCTGCTAAAGGATTTTCAC
GACACCTAA

Translation (492 aa):
MSVDMNSQGSDSNEEDYDPNCEEEEEEEEDPGDIEDYYVGVASDVEQQGADAFDPEEYQFTCLTYKESEG
ALHEHMTSLASVLKVSHSVAKLILVNFHWQVSEILDRYRSNSAQLLVEARVQPNPSKHVPTAHPPHHCAV
CMQFVRKENLLSLACQHQFCRSCWEQHCSVLVKDGVGVGISCMAQDCPLRTPEDFVFPLLPNEELRDKYR
RYLFRDYVESHFQLQLCPGADCPMVIRVQEPRARRVQCNRCSEVFCFKCRQMYHAPTDCATIRKWLTKCA
DDSETANYISAHTKDCPKCNICIEKNGGCNHMQCSKCKHDFCWMCLGDWKTHGSEYYECSRYKENPDIVN
QSQQAQAREALKKYLFYFERWENHNKSLQLEAQTYERIHEKIQERVMNNLGTWIDWQYLQNAAKLLAKCR
YTLQYTYPYAYYMESGPRKKLFEYQQAQLEAEIENLSWKVERADSYDRGDLENQMHIAEQRRRTLLKDFH
DT


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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