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Report for CCDS23581.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23581.1 Public Mus musculus 9 Ltf 23 108 98 CCDS HistoryNCBI Gene:17002Re-query CCDS DB by CCDS ID:23581.1Re-query CCDS DB by GeneID:17002See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23581.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035077.7 ENSMUSP00000035077.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035077.7Link to Ensembl Protein Viewer:ENSMUSP00000035077.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000035077Re-query CCDS DB by Protein ID:ENSMUSP00000035077
Original member Current member NCBI NM_008522.3 NP_032548.2 Accepted alive Link to Nucleotide Sequence:NM_008522.3Link to Protein Sequence:NP_032548.2Re-query CCDS DB by Nucleotide ID:NM_008522Re-query CCDS DB by Protein ID:NP_032548Link to BLAST:NP_032548.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032548.2 707 P08071 707 100% 0 0

Chromosomal Locations for CCDS 23581.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 111019326 111019368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111020847 111021007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111021926 111022034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111022281 111022463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111022834 111022981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111023557 111023612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111024384 111024562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111024998 111025172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111025975 111026129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111027330 111027420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111028445 111028492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111029534 111029689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111031017 111031158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111035747 111035814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111038806 111038990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111040328 111040517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111042148 111042182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2124 nt):
ATGAGGCTGCTCATCCCTTCCTTGATATTTCTTGAGGCCCTTGGACTCTGTCTAGCTAAGGCAACAACTG
TTCAATGGTGTGCTGTGTCAAATTCTGAGGAAGAAAAATGTTTAAGGTGGCAGAACGAGATGAGAAAAGT
GGGTGGCCCGCCGCTCAGTTGTGTCAAGAAATCCTCCACCCGCCAGTGCATCCAGGCCATTGTGACAAAC
AGAGCTGATGCCATGACTCTTGATGGTGGCACTATGTTCGATGCAGGAAAGCCCCCCTACAAACTGCGAC
CTGTGGCAGCTGAAGTCTACGGGACCAAAGAGCAGCCCCGGACTCACTACTATGCGGTAGCAGTCGTGAA
GAACAGCAGTAACTTTCATCTGAACCAACTCCAAGGCCTGAGGTCCTGCCACACCGGCATTGGCAGGAGT
GCGGGGTGGAAAATCCCTATAGGGACACTTCGTCCATACCTGAATTGGAATGGGCCACCTGCATCCCTTG
AGGAAGCGGTATCCAAGTTCTTCTCAAAGAGCTGTGTTCCCGGTGCCCAAAAGGATAGATTCCCCAACCT
GTGTAGCTCGTGTGCAGGGACAGGAGCCAACAAATGTGCCTCTTCCCCCGAGGAGCCATACTCAGGTTAT
GCTGGAGCCTTGAGGTGTCTGAGAGACAATGCTGGAGATGTGGCTTTTACCAGAGGAAGCACGGTATTTG
AGGAGTTACCAAATAAAGCCGAAAGGGACCAGTACAAGCTGCTCTGCCCAGACAACACCTGGAAGCCGGT
GACAGAATACAAGGAGTGCCACCTGGCCCAAGTCCCTTCACATGCTGTCGTATCCCGAAGCACGAATGAC
AAAGAAGAGGCCATCTGGGAGCTTCTCCGCCAGTCACAGGAGAAGTTTGGAAAAAAACAAGCATCGGGAT
TCCAGCTCTTTGCCTCCCCCTCGGGACAGAAGGACCTGCTGTTCAAGGAGTCTGCCATTGGCTTTGTGAG
GGTTCCCCAGAAGGTAGATGTAGGGCTCTACCTGACCTTCAGCTACACCACATCCATACAGAACCTGAAT
AAAAAGCAGCAGGATGTGATAGCCTCAAAGGCCCGGGTCACATGGTGTGCCGTGGGCAGTGAGGAGAAGC
GCAAGTGTGATCAGTGGAACAGAGCAAGCAGAGGCAGGGTCACCTGCATCTCATTCCCCACCACGGAAGA
CTGCATTGTCGCAATCATGAAGGGAGATGCTGATGCCATGAGCCTGGATGGAGGCTATATCTACACTGCG
GGCAAGTGCGGTTTAGTTCCAGTCTTGGCAGAGAACCAGAAATCCTCCAAAAGCAATGGCTTGGATTGTG
TGAACAGACCAGTGGAAGGGTACCTTGCTGTAGCAGCAGTTAGAAGAGAAGATGCTGGCTTCACCTGGAG
CTCTTTGAGAGGCAAGAAGTCCTGCCACACTGCCGTGGACAGGACCGCAGGCTGGAACATCCCCATGGGC
CTGCTTGCTAACCAGACCAGATCCTGCAAATTTAATGAGTTCTTTAGCCAAAGCTGTGCCCCTGGTGCTG
ACCCCAAATCCAATCTCTGTGCCCTGTGTATTGGTGATGAGAAGGGTGAGAACAAGTGTGCTCCCAACAG
CAAAGAGAGATACCAAGGCTACACTGGGGCTTTAAGGTGTCTGGCTGAGAAGGCAGGAAATGTTGCATTT
TTGAAGGACTCCACTGTCTTGCAGAATACTGACGGGAAGAACACTGAAGAGTGGGCTAGGAACTTAAAGC
TGAAGGACTTTGAGCTTTTGTGCCTTGATGACACCCGGAAACCTGTGACTGAGGCTAAGAACTGCCACCT
AGCCATAGCCCCAAACCATGCTGTAGTGTCTCGGACAGACAAGGTGGAAGTCCTTCAGCAGGTGCTGCTT
GACCAACAGGTTCAGTTTGGGAGAAATGGACAGAGGTGTCCAGGAGAGTTTTGCCTGTTCCAGTCTAAAA
CCAAAAACCTTCTGTTCAATGACAACACTGAGTGTCTGGCCAAGATCCCCGGCAAAACCACATCGGAGAA
GTATCTGGGAAAGGAGTACGTCATAGCGACCGAGCGCCTGAAGCAGTGCTCCAGCTCCCCACTCCTGGAA
GCCTGCGCTTTTCTTACCCAGTGA

Translation (707 aa):
MRLLIPSLIFLEALGLCLAKATTVQWCAVSNSEEEKCLRWQNEMRKVGGPPLSCVKKSSTRQCIQAIVTN
RADAMTLDGGTMFDAGKPPYKLRPVAAEVYGTKEQPRTHYYAVAVVKNSSNFHLNQLQGLRSCHTGIGRS
AGWKIPIGTLRPYLNWNGPPASLEEAVSKFFSKSCVPGAQKDRFPNLCSSCAGTGANKCASSPEEPYSGY
AGALRCLRDNAGDVAFTRGSTVFEELPNKAERDQYKLLCPDNTWKPVTEYKECHLAQVPSHAVVSRSTND
KEEAIWELLRQSQEKFGKKQASGFQLFASPSGQKDLLFKESAIGFVRVPQKVDVGLYLTFSYTTSIQNLN
KKQQDVIASKARVTWCAVGSEEKRKCDQWNRASRGRVTCISFPTTEDCIVAIMKGDADAMSLDGGYIYTA
GKCGLVPVLAENQKSSKSNGLDCVNRPVEGYLAVAAVRREDAGFTWSSLRGKKSCHTAVDRTAGWNIPMG
LLANQTRSCKFNEFFSQSCAPGADPKSNLCALCIGDEKGENKCAPNSKERYQGYTGALRCLAEKAGNVAF
LKDSTVLQNTDGKNTEEWARNLKLKDFELLCLDDTRKPVTEAKNCHLAIAPNHAVVSRTDKVEVLQQVLL
DQQVQFGRNGQRCPGEFCLFQSKTKNLLFNDNTECLAKIPGKTTSEKYLGKEYVIATERLKQCSSSPLLE
ACAFLTQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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