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Report for CCDS23587.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23587.1 Public Mus musculus 9 Arpp21 23 108 98 CCDS HistoryNCBI Gene:74100Re-query CCDS DB by CCDS ID:23587.1Re-query CCDS DB by GeneID:74100See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23587.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000162097.7 ENSMUSP00000124502.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162097.7Link to Ensembl Protein Viewer:ENSMUSP00000124502.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162097Re-query CCDS DB by Protein ID:ENSMUSP00000124502
Original member Current member EBI ENSMUST00000164754.8 ENSMUSP00000125862.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164754.8Link to Ensembl Protein Viewer:ENSMUSP00000125862.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000164754Re-query CCDS DB by Protein ID:ENSMUSP00000125862
Original member Current member NCBI NM_033264.2 NP_150289.1 Accepted alive Link to Nucleotide Sequence:NM_033264.2Link to Protein Sequence:NP_150289.1Re-query CCDS DB by Nucleotide ID:NM_033264Re-query CCDS DB by Protein ID:NP_150289Link to BLAST:NP_150289.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_150289.1 807 Q9DCB4-1 807 100% 0 0

Chromosomal Locations for CCDS 23587.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 112065765 112066022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112067161 112067309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112119183 112119309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112124740 112125000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112127279 112127460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112136454 112136681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112143309 112143538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112147423 112147482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112149335 112149372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112155418 112155516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112157690 112157798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112176095 112176235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112176934 112176993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112177658 112177736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112179028 112179172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112183495 112183584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112184269 112184310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112185609 112185734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2424 nt):
ATGTCTGAGCAAGGAGGACTGACTCCGACCATACTGGAAGAAGGGCAGACGGAGCCAGAGTCTGCCCCAG
AAAATGGCATCCTCAAGTCAGAAAGTCTGGATGAGGAGGAGAAGCTGGAACTGCAGCGGCGACTGGCGGC
TCAGAACCAAGAGAGGAGAAAATCCAAGTCAGGAGCAGGCAAAGGGAAGCTGACCAGAAGTCTTGCTGTC
TGTGAAGAGTCTTCAGCTAGATCTGGAGGGGAAAGTCACCAGGATCAGGAATCAATTCACTTACAGCTTT
CCAGTTTCCCCAGCCTGCAAGAGGAGGATAAATCTAGGAAGGATGATTCTGAGAGAGAAAAAGAAAAGGA
TAAGAACAGAGAGAAACTCTCTGAGAGACCCAAGATCAGAATGTTATCAAAAGATTGCAGCCAAGAATAC
ACAGATTCTACAGGCATAGACTTACATGGGTTTCTAATTAACACGCTGAAGAACAATTCCAGGGACAGGA
TGATACTCTTGAAAATGGAGCAGGAAATGATTGATTTCATTGCTGACAGCAATAACCACTATAAAAAGTT
CCCCCAGATGTCATCCTATCAAAGGATGCTGGTCCATCGGGTGGCAGCGTACTTTGGATTGGACCACAAC
GTGGATCAAACTGGAAAATCTGTCATCATCAACAAGACCAGCAGCACCAGGATACCAGAGCAAAGGTTTT
GTGAACATTTAAAAGATGAAAAAAGTGAAGAATCCCAGAAGCGGTTTATCTTGAAGCGAGATAACTCTAG
TATTGATAAAGAAGACAATCAGAACAGAATGCACCCATTTAGAGATGACAGACGAAGTAAATCAATTGAA
GAGAGAGAAGAGGAATATCAGAGAGTGAGGGAGAGAATATTTGCACATGATTCAGTTTGCTCACAGGAAA
GCCTATTTTTGGACAACAGTAGGCTCCAGGAAGACATGCACATATGCAATGAGACCTATAAGAAAAGACA
GCTCTTTCGGGCTCACCGAGACAGCTCAGGAAGAACTTCCGGGAGCCGGCAGAGCAGCTCAGAGACTGAG
CTCAGGTGGCCAGACCACCAGCGGGCTTGGAGCAGCACAGATTCGGACAGTTCCAACCGCAATCTGAAGC
CCACCATGACCAAGACGGCAAGTTTTGGGGGCATCACGGTGCTGACCAGGGGCGACAGCACGTCCAGTAC
CAGGAGTGCTGGGAAACTGTCCAAAACAGGTTCTGAGTCTTCCAGCAGTGCGGGCTCCTCAGGATCACTG
TCCCGCACCCACCCACAGAGCACGGCCCTGACCTCTAGCGTGGCAGCTGGTTCTCCTGGCTGTATGGCCT
ATTCAGAGAATGGAATGGGAGGCCAGGTTCCTCCCAGCAGCACCAGCTACATCCTCCTCCCACTTGAAAG
TGCGACTGGCATCCCACCCGGAAGCATCCTTCTTAATCCACACACAGGTCAGCCCTTTGTGAACCCGGAT
GGAACGCCTGCGATATACAACCCTCCCGGAAGTCAGCAGACACTGCGTGGCACTGTTGGTGGGCAGCCCC
AGCAACCTCCACAGCAGCAACCTTCGCCTCAGCCTCAGCAGCAGGTCCAGGCATCACAGCCCCAGATGGC
AGGGCCACTGGTCACTCAGAGAGAAGAACTGGCTGCCCAGTTCAGCCAGCTGAGCATGAGCCGGCAGTCC
TCGGGAGACACTCCTGAACCTCCCTCTGGTACAGTCTACCCAGCCTCTCTCCTGCCACAAACGGCTCAGC
CACAGAGTTATGTCATCACTTCTGCAGGCCAGCAGCTCTCTACAGGGGGCTTCTCGGACTCTGGCCCGCC
CATCTCCCAGCAGGTCCTGCAGGCCCCGCCCTCTCCCCAGGGATTTGTACAGCAGCCTCCACCTGCACAG
ATGTCCGTCTATTACTACCCATCTGGTCAGTACCCTACCTCAACCTCACAGCAGTACCGACCCCTCGCCT
CAGTCCAGTACAGTGCTCAGCGGAGTCAGCAAATACCACAGACCACACAGCAAGCAGGTTACCAGCCAGT
CTTGTCTGGTCAGCAGGGCTTCCAAGGCATGATGGGAGTACAGCAGTCAGCGCACAGCCAGGGTGTGATG
AGCAGTCAGCAAGGAGCCCCGGTGCATGGTGTGATGGTCTCCTACCCAACCATGTCTTCTTATCAGGTGC
CAATGACCCAAGGCTCTCAAGCAGTGCCCCAGCAGACATACCAACCACCAATCATGCTGCCCAGTCAGGC
AGGCCAAGGGTCACTCCCAGCCACCGGAATGCCTGTGTACTGTAACGTCACACCGCCAAACCCTCAGAAC
AACCTAAGGTTGATGGGTCCACACTGCCCCTCCAGCACGGTTCCTGTCATGTCCGCTAGTTGCAGAACAA
ACTGTGGGAACGTGAGCAACGCAGGCTGGCAGGTCAAGTTCTGA

Translation (807 aa):
MSEQGGLTPTILEEGQTEPESAPENGILKSESLDEEEKLELQRRLAAQNQERRKSKSGAGKGKLTRSLAV
CEESSARSGGESHQDQESIHLQLSSFPSLQEEDKSRKDDSEREKEKDKNREKLSERPKIRMLSKDCSQEY
TDSTGIDLHGFLINTLKNNSRDRMILLKMEQEMIDFIADSNNHYKKFPQMSSYQRMLVHRVAAYFGLDHN
VDQTGKSVIINKTSSTRIPEQRFCEHLKDEKSEESQKRFILKRDNSSIDKEDNQNRMHPFRDDRRSKSIE
EREEEYQRVRERIFAHDSVCSQESLFLDNSRLQEDMHICNETYKKRQLFRAHRDSSGRTSGSRQSSSETE
LRWPDHQRAWSSTDSDSSNRNLKPTMTKTASFGGITVLTRGDSTSSTRSAGKLSKTGSESSSSAGSSGSL
SRTHPQSTALTSSVAAGSPGCMAYSENGMGGQVPPSSTSYILLPLESATGIPPGSILLNPHTGQPFVNPD
GTPAIYNPPGSQQTLRGTVGGQPQQPPQQQPSPQPQQQVQASQPQMAGPLVTQREELAAQFSQLSMSRQS
SGDTPEPPSGTVYPASLLPQTAQPQSYVITSAGQQLSTGGFSDSGPPISQQVLQAPPSPQGFVQQPPPAQ
MSVYYYPSGQYPTSTSQQYRPLASVQYSAQRSQQIPQTTQQAGYQPVLSGQQGFQGMMGVQQSAHSQGVM
SSQQGAPVHGVMVSYPTMSSYQVPMTQGSQAVPQQTYQPPIMLPSQAGQGSLPATGMPVYCNVTPPNPQN
NLRLMGPHCPSSTVPVMSASCRTNCGNVSNAGWQVKF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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