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Report for CCDS23626.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23626.1 Public Mus musculus 9 Mobp 23 108 98 CCDS HistoryNCBI Gene:17433Re-query CCDS DB by CCDS ID:23626.1Re-query CCDS DB by GeneID:17433See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23626.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068698.14 ENSMUSP00000071084.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068698.14Link to Ensembl Protein Viewer:ENSMUSP00000071084.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000068698Re-query CCDS DB by Protein ID:ENSMUSP00000071084
Original member Current member NCBI NM_001039365.3 NP_001034454.1 Accepted alive Link to Nucleotide Sequence:NM_001039365.3Link to Protein Sequence:NP_001034454.1Re-query CCDS DB by Nucleotide ID:NM_001039365Re-query CCDS DB by Protein ID:NP_001034454Link to BLAST:NP_001034454.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034454.1 170 Q9D2P8-1 170 100% 0 0

Chromosomal Locations for CCDS 23626.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 120167805 120168010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120168223 120168529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (513 nt):
ATGAGTCAGAAAATGGCCAAGGAGGGCCCCAGGCTCTCCAAGAACCAGAAGTTCTCCGAGCACTTCAGCA
TCCACTGCTGCCCACCCTTCACCTTCCTCAACTCCAAGCGTGAGATCGTGGACCGCAAGTACAGCATCTG
CAAGAGCGGTTGCTTTTACCAGAAGAAGGAGGAGGACTGGATCTGCTGTGCCTGCCAGAAGACTAGCCGC
CGTGCCACGTCCCCTCAGAGGCCCAAGCACCAGCCAGCTGCGTCCCCAGTGGTGGTCAGAGCGCCGCCAG
CCAAGCCAAAGTCCCCTCTGATGCCAGCCAAGCCAAGGTCCCCACCGAGGCCAGCCAAGCCAAGGTCCCC
TTCAAGGACTGAGCGCCAGCCGCGTCCCCGCCCAGAGGTCCGACCACCACCAGCCAAGCAGAAGCCCCCT
CAGAAGTCTAAGCAGCCAGCACGCAGCAGCCCCCTCAGAGGGCCAGGCACCAGCCGCGGGGGGTCTCCCA
CCAGAGCTCCTAGGTTCTGGTAA

Translation (170 aa):
MSQKMAKEGPRLSKNQKFSEHFSIHCCPPFTFLNSKREIVDRKYSICKSGCFYQKKEEDWICCACQKTSR
RATSPQRPKHQPAASPVVVRAPPAKPKSPLMPAKPRSPPRPAKPRSPSRTERQPRPRPEVRPPPAKQKPP
QKSKQPARSSPLRGPGTSRGGSPTRAPRFW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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