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Report for CCDS23652.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23652.1 Public Mus musculus 9 Tmem42 23 108 98 CCDS HistoryNCBI Gene:66079Re-query CCDS DB by CCDS ID:23652.1Re-query CCDS DB by GeneID:66079See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23652.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084733.6 ENSMUSP00000081784.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084733.6Link to Ensembl Protein Viewer:ENSMUSP00000081784.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000084733Re-query CCDS DB by Protein ID:ENSMUSP00000081784
Original member Current member NCBI NM_025339.4 NP_079615.1 Accepted alive Link to Nucleotide Sequence:NM_025339.4Link to Protein Sequence:NP_079615.1Re-query CCDS DB by Nucleotide ID:NM_025339Re-query CCDS DB by Protein ID:NP_079615Link to BLAST:NP_079615.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079615.1 157 Q9CR22 157 100% 0 0

Chromosomal Locations for CCDS 23652.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 123021379 123021570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123022166 123022312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123022839 123022973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (474 nt):
ATGGCGGCCGGTCCGCAGTCCTCGGGTGCCGCCGTGTCTGCGGCCGCTTACCCTGACTCACCCGTGGAGT
TACCCGCTCGCCTACAGAAAGGCGCGATGCGGCGCCGCTTCTGGGGCGTGTTCAACTGTCTGTGCGCCGG
GGCGTTCGGGGCTCTGGCCGCCGCCGCCGCCAAGCTGGCCTTCGGGAGCCAGGTCAATATTGGCTTATGT
GTCTTAGGCATCGTTGCCATGGCAAGCGCCAATTCTCTGATGTGGACCTTCTTTAGCCGGGGCCTCAGTT
TCTCTATGTCTTCAGCCATTGCATCTGTCACAGTGACTTTCTCGAACATACTTTGCTCGGCCATCTTAGG
CTACCTGCTGTATGGAGAGTGCCAGGAGATCTTATGGTGGGGAGGGGTGTTCCTCATCCTCTGTGGGCTC
ACCCTGATCCACAGGAAGTTTCCACCCACCTGGAAGGAGAGCAAGGAGCAGTGA

Translation (157 aa):
MAAGPQSSGAAVSAAAYPDSPVELPARLQKGAMRRRFWGVFNCLCAGAFGALAAAAAKLAFGSQVNIGLC
VLGIVAMASANSLMWTFFSRGLSFSMSSAIASVTVTFSNILCSAILGYLLYGECQEILWWGGVFLILCGL
TLIHRKFPPTWKESKEQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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