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Report for CCDS23697.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23697.1 Public Mus musculus 10 Fbxo30 23 108 98 CCDS HistoryNCBI Gene:71865Re-query CCDS DB by CCDS ID:23697.1Re-query CCDS DB by GeneID:71865See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23697.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070300.4 ENSMUSP00000068230.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070300.4Link to Ensembl Protein Viewer:ENSMUSP00000068230.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000070300Re-query CCDS DB by Protein ID:ENSMUSP00000068230
Original member Current member EBI ENSMUST00000129456.7 ENSMUSP00000117687.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000129456.7Link to Ensembl Protein Viewer:ENSMUSP00000117687.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000129456Re-query CCDS DB by Protein ID:ENSMUSP00000117687
Original member Current member NCBI NM_001168297.1 NP_001161769.1 Accepted alive Link to Nucleotide Sequence:NM_001168297.1Link to Protein Sequence:NP_001161769.1Re-query CCDS DB by Nucleotide ID:NM_001168297Re-query CCDS DB by Protein ID:NP_001161769Link to BLAST:NP_001161769.1
Original member Current member NCBI NM_027968.3 NP_082244.2 Accepted alive Link to Nucleotide Sequence:NM_027968.3Link to Protein Sequence:NP_082244.2Re-query CCDS DB by Nucleotide ID:NM_027968Re-query CCDS DB by Protein ID:NP_082244Link to BLAST:NP_082244.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161769.1 746 Q8BJL1 746 100% 0 0
NP_082244.2 746 Q8BJL1 746 100% 0 0

Chromosomal Locations for CCDS 23697.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 11289536 11291572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11295217 11295420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2241 nt):
ATGGAGGAAGAGGTACAGCAGCACTCACACTGTATGAACTGTGTCAGTAGACGGTGTATGACCAGACCAG
AGCCTGGGGTTTCCTGTGACTTGATTGGCTGTCCATTGGTTTGTGGAGCAGTTTTCCATTCTTGTAAAGC
TGACGAACATCGGCTCTTGTGTCCCTTTGAACGAGTAGCTTGCTTAAATAGAAACTTTGGATGTCCATTT
ACCCTGGCACGAAATAAAGTTGCTGAACATCTAGAAATGTGTCCTGCAAGTGTGGTGTGCTGTACTATGG
AATGGAATCGATGGCCCGTTAGTTATTCAGACCGGAAGTCATATGAAAGTCTAAGCAGAGATGTTGATGA
AGTGGCACAATTAGACATGGCTTTGGCTCTTCAAGATCAAAGAATGCTTTTGGAATCTCTTAAAGTAGCC
ACCATGATGTCAAAAGCAACTGATAAAATATCTGAACCTAGAGAACAAATCTCAGTGAAATCAAGTGTTC
AGGAAATACCACGTACTAACGGGTTGGTATCCGTTGATGAAGAATCCTATGGTGCACTTTATCAAGCTAC
TGTAGAAACAACCAGAAGTTTGGCTGCTGCTTTAGATATCCTAAATTCTGCCACAAGAGACATTGGCATG
TTAAATACAAGTCTCCATGCTACTGCGAATGAAATGGATGAGGAGAATAACAAAGAAAGCTTCCAGGACA
AAAACTTGAAAGACCAGGACCACCTTGATGAGGGTGAGATAGGGGCAGTAGGTGGAGTTGATTATAGTGG
CACAAGTCAGAATGCTCAGGCTGAACAAAATGGCTCAAGTGATTTGTTATGTGACTTAAATCCAAGTTCT
AATGGTACTTCTGCTCTTTGCAATGGCTTTCCTTTGGAAAAGATGTGTATTCAGGTCAAAGGCCAGGATC
AAAATTTTCATGGTGATTCCACAGAAAGTAATATAACAAATGGAGATTGTGTGGAAGCTGATGGTACTTC
AGAACCTTCCAGTTCACTTGTAGTACCAGAACAACTGAGGGAAATAAGTCCTTTCAGTGCTTTGCCAGAT
AGTACATTTCAGCAAATCCTCATGCCAGATGAAGACGATGAGAAGGACTTGTGTTGGAAAAAAGTAGACT
TGGGAGACTTGAAGGATGTTAATGGTTCACCTTTCAGTCATGCGCCTTCATTCAAGTTTCTTTCTAATTC
ATGGTATATACCAAAGGAAGACAAAGCAGTTGATACATCAGATTTAGAAGTTGCAGAAGATCCCATGGGC
CTCCAAGGAATAGATCTGATTACAGCAGCATTACTGTTTTGTCTGGGAGATTCTCCAGGTGGGAGAGGTA
TATCTGATAGCCGCATGACTGATGTTTATCACGTTGACTTTGGGACACAGACTTTTTCACTTCCATCTGC
AATATTAGCTACAAATACAATGGTTGGAGAAATAGCTTCGGCTTCAGCTTGTGATCATGCCAATCCACAG
CTTTCAAATCCAAGCCCTTTTCAGACACTTGGGCTGGACTTAGTTTTGGAATGTGTTGCTAGGTACCAGC
CTAAGCAGCGTTCAATGTTTACCTTTGTATGCGGACAGCTATTTAGAAGAAAAGAATTTTCTTCCCATTT
TAAGAATGTGCATGGTGACATTCATGCTGGACTCAATGGATGGATGGAACAGAGGTGTCCTTTAGCTTAT
TATGGTTGTACCTATTCTCAGCGTAGATTTTGCCCATCGACACAAGGAGCAAAGATCATACATGATCGCC
ATTTAAGGTCATTTGGAGTTCAGCCATGTGTATCTACAGTATTAGAAGAACCTTCTAGAAACTGTGTGTT
GGGATTGCGTAGTGACCATCTAAGTAGTCTCCCTTTTGAGGTACTCCAACATATTGCAGGCTTCCTTGAC
GGCTTCAGTTTATGCCAGCTTGCATGTGTATCCCGGCTAATGAGGGACGTTTGTGGCAGTTTACTTCAGT
CTCGTGGAATGGTAATCTTGCAGTGGGGGAAGAAGAAGTATCCGGAAGGAAATTCATCATGGCAGATAAA
AGAGAAGGTATGGCGATTCAGTACTGCATTTTGTTCTGTTAATGACTGGAAATTTGCTGACATCCTGAGC
ATGGCTGACCACTTGAAGAACTGCAGTTACAACGTGATAGAGAAACGGGAGGAAGCCATCCCATTGCCGT
GTATGTGTGTGACTCGAGAGCTTACAAAAGAAGGACGTTCCCTGCGCTCAGTTTTAAAGCCTGTGCTTTA
A

Translation (746 aa):
MEEEVQQHSHCMNCVSRRCMTRPEPGVSCDLIGCPLVCGAVFHSCKADEHRLLCPFERVACLNRNFGCPF
TLARNKVAEHLEMCPASVVCCTMEWNRWPVSYSDRKSYESLSRDVDEVAQLDMALALQDQRMLLESLKVA
TMMSKATDKISEPREQISVKSSVQEIPRTNGLVSVDEESYGALYQATVETTRSLAAALDILNSATRDIGM
LNTSLHATANEMDEENNKESFQDKNLKDQDHLDEGEIGAVGGVDYSGTSQNAQAEQNGSSDLLCDLNPSS
NGTSALCNGFPLEKMCIQVKGQDQNFHGDSTESNITNGDCVEADGTSEPSSSLVVPEQLREISPFSALPD
STFQQILMPDEDDEKDLCWKKVDLGDLKDVNGSPFSHAPSFKFLSNSWYIPKEDKAVDTSDLEVAEDPMG
LQGIDLITAALLFCLGDSPGGRGISDSRMTDVYHVDFGTQTFSLPSAILATNTMVGEIASASACDHANPQ
LSNPSPFQTLGLDLVLECVARYQPKQRSMFTFVCGQLFRRKEFSSHFKNVHGDIHAGLNGWMEQRCPLAY
YGCTYSQRRFCPSTQGAKIIHDRHLRSFGVQPCVSTVLEEPSRNCVLGLRSDHLSSLPFEVLQHIAGFLD
GFSLCQLACVSRLMRDVCGSLLQSRGMVILQWGKKKYPEGNSSWQIKEKVWRFSTAFCSVNDWKFADILS
MADHLKNCSYNVIEKREEAIPLPCMCVTRELTKEGRSLRSVLKPVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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