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Report for CCDS23778.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23778.1 Public Mus musculus 10 Tspyl4 23 108 98 CCDS HistoryNCBI Gene:72480Re-query CCDS DB by CCDS ID:23778.1Re-query CCDS DB by GeneID:72480See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23778.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047935.7 ENSMUSP00000036360.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047935.7Link to Ensembl Protein Viewer:ENSMUSP00000036360.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000047935Re-query CCDS DB by Protein ID:ENSMUSP00000036360
Original member Current member NCBI NM_030203.2 NP_084479.1 Accepted alive Link to Nucleotide Sequence:NM_030203.2Link to Protein Sequence:NP_084479.1Re-query CCDS DB by Nucleotide ID:NM_030203Re-query CCDS DB by Protein ID:NP_084479Link to BLAST:NP_084479.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084479.1 406 Q8VD63 406 100% 0 0

Chromosomal Locations for CCDS 23778.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 34297514 34298734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1221 nt):
ATGAACGGCGTGGAAGGGAACAACGAGCTATCTCTCGCTAACACCACGACCCCCTCCCATGCCTCCGAAG
ATCTGGATCTGAAGCAGGACCAGGGGCTCCAAGAGGAAACCGACACAGTGCGGGAGATGGAGGCTGCAGG
TGAGGCCGGTGCGGATGGAGGCGCGTCTCCGGATTCCGAGCACTGCGGCCCCGAGCTCTGCTTCCGAGTG
GCTGAGAATAGTTGTGCTGCGGCAGCGAGAGGTCTGGAGGATGCTCCGTCTCCATCAAAGGGCGGGGACG
CACCCTCAGCCCCTGTGGCAGCCGACGACAGCAGTAAAAATGGCTGTCAGCTTGAAGGGCCTCACAGCCC
TGCTAAACCGAAAGCCCTGGAAGCCTGTGGTGCGGTGGGCCTGGGGTCTCAGCAGATGCCGGGGCCGAAG
AAGACCAAGGAAATGACGACTACCAAGTGCGCCATCTCTGTGGCCACCGGCAAGGAGGGAGAAGCAGGAG
CGGCAATGCAGGAAAAGAAGGGGTTACAGAAGGAAAAAAAGGTAGCTGGAGGAGGGAAAGAGGAGACTCG
ACCCAGAGCTCCGAAGATCAATTGCATGGACTCGCTGGAGGCCATCGATCAAGAGCTGTCAAATGTAAAT
GCGCAGGCTGACAGGGCCTTCCTCCAGCTGGAACGCAAATTTGGGCGGATGAGAAGGCTCCACATGCAGC
GCAGAAGTTTCATCATCCAAAACATCCCAGGTTTCTGGGTCACCGCTTTTCGGAACCACCCCCAGCTGTC
ACCAATGATTAGTGGCCAAGATGAAGACATGATGAGGTACATGATCAATTTAGAGGTGGAGGAGCTTAAG
CAGCCAAGAGTAGGGTGCAAATTTAAGTTCATCTTTCAAAGCAACCCCTACTTTCGAAATGAGGGGCTGG
TCAAAGAATATGAGCGCAGATCCTCAGGTCGAGTGGTGTCACTCTCTACGCCAATCCGCTGGCACCGGGG
TCAGGAACCCCAGGCCCACATCCACAGGAATAGGGAGGGGAACACGATTCCCAGTTTCTTCAACTGGTTC
TCAGACCACAGCCTCCTAGAATTCGACAGAATAGCTGAAATTATCAAAGGGGAGCTGTGGTCCAATCCCC
TACAATACTATCTGATGGGCGATGGGCCACGCCGTGGAGTTCGAGTCCCACCAAGGCAGCCAGTGGAGAG
TCCCAGGTCCTTCAGGTTCCAGTCTGGCTAA

Translation (406 aa):
MNGVEGNNELSLANTTTPSHASEDLDLKQDQGLQEETDTVREMEAAGEAGADGGASPDSEHCGPELCFRV
AENSCAAAARGLEDAPSPSKGGDAPSAPVAADDSSKNGCQLEGPHSPAKPKALEACGAVGLGSQQMPGPK
KTKEMTTTKCAISVATGKEGEAGAAMQEKKGLQKEKKVAGGGKEETRPRAPKINCMDSLEAIDQELSNVN
AQADRAFLQLERKFGRMRRLHMQRRSFIIQNIPGFWVTAFRNHPQLSPMISGQDEDMMRYMINLEVEELK
QPRVGCKFKFIFQSNPYFRNEGLVKEYERRSSGRVVSLSTPIRWHRGQEPQAHIHRNREGNTIPSFFNWF
SDHSLLEFDRIAEIIKGELWSNPLQYYLMGDGPRRGVRVPPRQPVESPRSFRFQSG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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