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Report for CCDS23805.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23805.1 Public Mus musculus 10 Smpd2 23 108 98 CCDS HistoryNCBI Gene:20598Re-query CCDS DB by CCDS ID:23805.1Re-query CCDS DB by GeneID:20598See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23805.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019965.12 ENSMUSP00000019965.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019965.12Link to Ensembl Protein Viewer:ENSMUSP00000019965.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000019965Re-query CCDS DB by Protein ID:ENSMUSP00000019965
Original member NCBI NM_009213.2 NP_033239.1 Updated not alive Link to Nucleotide Sequence:NM_009213.2Link to Protein Sequence:NP_033239.1Re-query CCDS DB by Nucleotide ID:NM_009213Re-query CCDS DB by Protein ID:NP_033239
Current member NCBI NM_009213.3 NP_033239.1 Accepted alive Link to Nucleotide Sequence:NM_009213.3Link to Protein Sequence:NP_033239.1Re-query CCDS DB by Nucleotide ID:NM_009213Re-query CCDS DB by Protein ID:NP_033239Link to BLAST:NP_033239.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033239.1 419 O70572 419 100% 0 0

Chromosomal Locations for CCDS 23805.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 41487206 41487582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41487672 41487825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41487993 41488097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41488177 41488309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41488433 41488515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41488734 41488823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41488931 41489024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41489275 41489351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41489464 41489560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41489983 41490032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1260 nt):
ATGAAGCTCAACTTTTCTCTACGGCTGAGAGTTTTCAATCTCAACTGCTGGGACATCCCCTACCTGAGCA
AACATAGGGCGGACCGCATGAAGCGCTTGGGAGACTTTCTGAACTTGGAAAACTTTGATCTGGCTCTCCT
GGAGGAGGTGTGGAGTGAGCAGGACTTCCAGTACCTAAGGCAAAGGCTATCGCTCACCTATCCAGATGCA
CACTACTTCAGAAGCGGGATGATAGGCAGTGGCCTCTGTGTGTTCTCCAAACACCCAATCCAGGAAATCT
TCCAGCATGTCTACAGTCTGAATGGTTACCCCTACATGTTCCATCATGGAGACTGGTTCTGTGGGAAGTC
TGTGGGGCTGCTGGTGCTCCGTCTAAGTGGACTGGTGCTCAATGCCTACGTGACTCATCTACATGCTGAG
TACAGCCGACAGAAGGACATCTACTTTGCACACCGTGTGGCCCAAGCTTGGGAACTGGCCCAGTTCATCC
ACCACACATCCAAGAATGCAGATGTGGTTCTATTGTGTGGAGACCTCAATATGCACCCCAAAGACCTGGG
CTGCTGCCTGCTGAAAGAGTGGACAGGGCTCCATGATGCTTTCGTTGAGACTGAGGACTTTAAGGGCTCT
GATGATGGCTGTACCATGGTACCCAAGAACTGCTACGTCAGCCAGCAGGACCTGGGACCGTTTCCGTCTG
GTATCCGGATTGATTACGTGCTTTACAAGGCAGTCTCTGAGTTCCACGTCTGCTGTGAGACTCTGAAAAC
CACTACAGGCTGTGACCCTCACAGTGACAAGCCCTTCTCTGATCACGAGGCCCTCATGGCTACTTTGTAT
GTGAAGCACAGCCCCCCTCAGGAAGACCCCTGTACTGCCTGTGGCCCACTGGAAAGGTCCGATTTGATCA
GCGTGCTAAGGGAGGCCAGGACAGAGCTGGGGCTAGGCATAGCTAAAGCTCGCTGGTGGGCTGCATTCTC
TGGCTATGTGATCGTTTGGGGGCTGTCCCTTCTGGTGTTGCTGTGTGTCCTGGCTGCAGGAGAAGAGGCC
AGGGAAGTGGCCATCATCCTCTGCATACCCAGTGTGGGTCTGGTGCTGGTAGCAGGTGCAGTCTACCTCT
TCCACAAGCAGGAGGCCAAGGGCTTATGTCGGGCCCAGGCTGAGATGCTGCACGTTCTGACAAGGGAAAC
GGAGACCCAGGACCGAGGCTCAGAGCCTCACCTAGCCTACTGCTTGCAGCAGGAGGGGGACAGAGCTTAA

Translation (419 aa):
MKLNFSLRLRVFNLNCWDIPYLSKHRADRMKRLGDFLNLENFDLALLEEVWSEQDFQYLRQRLSLTYPDA
HYFRSGMIGSGLCVFSKHPIQEIFQHVYSLNGYPYMFHHGDWFCGKSVGLLVLRLSGLVLNAYVTHLHAE
YSRQKDIYFAHRVAQAWELAQFIHHTSKNADVVLLCGDLNMHPKDLGCCLLKEWTGLHDAFVETEDFKGS
DDGCTMVPKNCYVSQQDLGPFPSGIRIDYVLYKAVSEFHVCCETLKTTTGCDPHSDKPFSDHEALMATLY
VKHSPPQEDPCTACGPLERSDLISVLREARTELGLGIAKARWWAAFSGYVIVWGLSLLVLLCVLAAGEEA
REVAIILCIPSVGLVLVAGAVYLFHKQEAKGLCRAQAEMLHVLTRETETQDRGSEPHLAYCLQQEGDRA


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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