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Report for CCDS23873.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23873.1 Public Mus musculus 10 Tbata 23 108 98 CCDS HistoryNCBI Gene:65971Re-query CCDS DB by CCDS ID:23873.1Re-query CCDS DB by GeneID:65971See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23873.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035894.11 ENSMUSP00000036422.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035894.11Link to Ensembl Protein Viewer:ENSMUSP00000036422.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000035894Re-query CCDS DB by Protein ID:ENSMUSP00000036422
Original member Current member NCBI NM_001017433.2 NP_001017433.1 Accepted alive Link to Nucleotide Sequence:NM_001017433.2Link to Protein Sequence:NP_001017433.1Re-query CCDS DB by Nucleotide ID:NM_001017433Re-query CCDS DB by Protein ID:NP_001017433Link to BLAST:NP_001017433.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001017433.1 393 Q7TSD4-1 393 100% 0 0

Chromosomal Locations for CCDS 23873.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 61174412 61174455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61175731 61175978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61179245 61179505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61180315 61180394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61183300 61183491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61185302 61185383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61186290 61186431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61187677 61187729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61188596 61188675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1182 nt):
ATGACTACAGAGGTGAACCAGCTGTCTGAGCATCCTCTAGTGAGTCCAAAGGCAGAGCCCCAGCCAGAGA
CGAAGCCGGAGAACCTTCCAAGGAGCCACGGGGATGTTGGGCTCCAGAAAGAGACTGTGGTCCCAGGCAT
TGTGGATTTCGAGCTGATCCATGAGGAGCTGAAGACCACAAAGCCCCAAACATCACAACCAACACCCAGT
GCCTACCGCTTTGGACGCCTAAGCCACCATTCCTTCTTCTCGAGGCACCACCCCCAACCACAGCGAGTGA
CTCATATCCAAGTTACAGGAAGAGAGGACCTGGAGCACTCCCTGCCCCTCACCACCTCTTTCCAGCTCCT
TCAAGCTCCTGGGGTCCAGCCCATGGATCTCACTCCCTCTGCAGATATCGCTGGGAAGCCTGTCTGCGTG
GTCAGGGACGAGTTCTCTCTGTCGGCCTTGACTCAGCCCACATTCTTATCCCGCTGTCTGATGGGGATGC
CCACCATCTCTGTCCCCATTGGGGATCCACAGTCCAATCGGAACCCCCAGCTTTCTACTTCTGACACCTG
GAGGAAGAAACTGAAGGACCTGGCTTCCCGAGTGACTGTCTTCACTAAGGAAATCCAGCCAAAGCCCGAT
GAGCAGAAGGAAGAGCCACCTCTGAGGGAACCTCCTCCGAGAGAGCAGGGGGCCAAATACTCAGCTGAGA
CCGGTAGGCTTATCCCTGCTTCCAGCCAAGCCCTCACCCGTCGCAACCGCCAGGGCCAGCGGGTCCACCC
TTCTAGCAAAGATGGAGGAGTCCAAGCCTCCATTCTGCAGGACCAGGAGCTGCTGATTTTGGAGCTCCTT
TGTCAAATTCTACAAACAGATTCTCTAAGGGCTATTCAGTTCTGGCTGCTTTATGCTCCATCAAAAGAAA
AAGATTTAGCTCTGGGGCTTCTGCAAACTGCCGTGGCTCAGCTTATCCCCCAGCCCCTTTCCTCCATCCC
AGCAGAGAAGCTCTGGAACCATCTCCAAGAGCTTCAAGAGCCTCAAGAGACACAAGAGGCAGCCTACAGT
CCATCCCTGAAGAAGACTAGGTCACCACCTCTACCCAAAACAGACAAACCAGAGTACATAGGCAAAGCCC
AAGTCCTCCTGGTGCATCCCAGCGAGGACCCAGAGGAGAAAACGACCAAGGCTGAAAGCTGA

Translation (393 aa):
MTTEVNQLSEHPLVSPKAEPQPETKPENLPRSHGDVGLQKETVVPGIVDFELIHEELKTTKPQTSQPTPS
AYRFGRLSHHSFFSRHHPQPQRVTHIQVTGREDLEHSLPLTTSFQLLQAPGVQPMDLTPSADIAGKPVCV
VRDEFSLSALTQPTFLSRCLMGMPTISVPIGDPQSNRNPQLSTSDTWRKKLKDLASRVTVFTKEIQPKPD
EQKEEPPLREPPPREQGAKYSAETGRLIPASSQALTRRNRQGQRVHPSSKDGGVQASILQDQELLILELL
CQILQTDSLRAIQFWLLYAPSKEKDLALGLLQTAVAQLIPQPLSSIPAEKLWNHLQELQEPQETQEAAYS
PSLKKTRSPPLPKTDKPEYIGKAQVLLVHPSEDPEEKTTKAES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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