NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS23913.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23913.1 Public Mus musculus 10 Slc16a9 23 108 98 CCDS HistoryNCBI Gene:66859Re-query CCDS DB by CCDS ID:23913.1Re-query CCDS DB by GeneID:66859See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23913.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046807.6 ENSMUSP00000047912.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046807.6Link to Ensembl Protein Viewer:ENSMUSP00000047912.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000046807Re-query CCDS DB by Protein ID:ENSMUSP00000047912
Original member Current member NCBI NM_025807.3 NP_080083.2 Accepted alive Link to Nucleotide Sequence:NM_025807.3Link to Protein Sequence:NP_080083.2Re-query CCDS DB by Nucleotide ID:NM_025807Re-query CCDS DB by Protein ID:NP_080083Link to BLAST:NP_080083.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080083.2 508 Q7TM99 508 100% 0 0

Chromosomal Locations for CCDS 23913.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 70255997 70256192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70267092 70267235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70274926 70275021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70282289 70283197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70283874 70284055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1527 nt):
ATGGAATTTCAGAAGTCACCTGACGGAGGGTGGGGCTGGGTGATTGTGGTTGTCTCCTTCTTCACCCAGT
TCCTCTCTTACGGATCCCCGTTAGCTGTTGGGGTCTTGTATGTAGAATGGCTGGATGCCTTCGGTGAAGG
AAAAGGAAAAACAGCTTGGGTGGGATCCCTGGCGAGCGGAGTCGGCTTGCTTGCAAGTCCTGTGTGCAGT
CTCTTCGTCTCATCTTTTGGAGCAAGACCCGTCACAATCTTCAGTGGCTTCCTGGTGGCTGGCGGTCTAA
TGCTGAGCAGTCTTGCCCCCAATATCTACTTTCTGTTTTTTTCCTATGGCATCGTTGTAGGTCTCGGATG
TGGCTTATTATACACAGCGACGGTGACCATCACATGCCAGTATTTTGACAGCCGCAGAGGCCTCGCCCTC
GGCCTGATTTCAACAGGTTCGAGTGTGGGTCTATTCATCTACGCAGCTCTGCAGAGGATGCTGATTGAAT
TCTATGGCCTAGATGGCTGCCTGCTCATCGTGGGCGCTTTAGCTTTAAACATCCTAGCCTGTGGCAGCCT
GATGAGGCCCTTGCAAACCTCCGACTGTCCTTTTCCTGAAAAGACAGCTCCAGAGAATGTTCCAGACAGA
TACTCCATGTATAACGAGAAAGAGAAGAACCCAGAGGAGACTATGAACTTCCAAGACAAGGGCTACAGTA
GCGAAGATAAATGCTTGCCCAATGGAGACTGGGGACGGGAGACTTCCCTTCCTAAAAGCCTCGCCATCGC
TGCACACACCAAGGAGCCCGAGACGTACAAAAAGAAGGTCGTAGAACAGACTAATTTTTGCAAGCAGCTT
GCCAAGAGGAAATGGCAGCTATATAGGAACTACTGTGGAGAGACCGCGTCTCTTTTTAAAAACAAAGTCT
TCTCCGCGCTATTCATCGCCATCTTGCTTTTTGACATCGGAGGATTTCCACCATCGCTGCTCATGGAGGA
TGTCGCGAGAAGTTACCACGTGAGGGAAGAAGATCTTACCATGCCTCTCATCTCCATTTTCGGCATCATG
ACAGCCGTGGGCAAGCTTCTTTTGGGCATCCTGGCTGACTTCAAGTGGATCAACACCCTGTATCTCTACG
TAGCTACCCTGATCATCACTGGCCTGGCCTTGTGCGCAATCCCCTTTGCCAAGAGTTACGTCACGCTGGC
TATCCTTTCTGGCATCTTGGGTTTTCTTACTGGTAACTGGTCTATCTTCCCGTATGTGACCACGAAGACT
GTGGGGATTGACAAATTAGCCCACGCCTATGGAATACTCATGTTTTTTGCTGGACTTGGGAACAGCCTCG
GGCCACCCATAGTTGGTTGGTTCTATGATTGGACCCAGACCTATGACATCGCCTTTTATTTCAGTGGCTT
CTGTGTCCTGCTCGGGGGATTCATCCTGCTGCTCGCCATCTTGCCCTGTTGGGATATGTGCAACAAAAAA
CTACCTAAGCCAGCAGTGCCAACCACCTTTTTCTACAAAGTTGCCTCTAATGTTTAG

Translation (508 aa):
MEFQKSPDGGWGWVIVVVSFFTQFLSYGSPLAVGVLYVEWLDAFGEGKGKTAWVGSLASGVGLLASPVCS
LFVSSFGARPVTIFSGFLVAGGLMLSSLAPNIYFLFFSYGIVVGLGCGLLYTATVTITCQYFDSRRGLAL
GLISTGSSVGLFIYAALQRMLIEFYGLDGCLLIVGALALNILACGSLMRPLQTSDCPFPEKTAPENVPDR
YSMYNEKEKNPEETMNFQDKGYSSEDKCLPNGDWGRETSLPKSLAIAAHTKEPETYKKKVVEQTNFCKQL
AKRKWQLYRNYCGETASLFKNKVFSALFIAILLFDIGGFPPSLLMEDVARSYHVREEDLTMPLISIFGIM
TAVGKLLLGILADFKWINTLYLYVATLIITGLALCAIPFAKSYVTLAILSGILGFLTGNWSIFPYVTTKT
VGIDKLAHAYGILMFFAGLGNSLGPPIVGWFYDWTQTYDIAFYFSGFCVLLGGFILLLAILPCWDMCNKK
LPKPAVPTTFFYKVASNV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH