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Report for CCDS24034.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24034.2 Public Mus musculus 10 Jsrp1 23 108 98 CCDS HistoryNCBI Gene:71912Re-query CCDS DB by CCDS ID:24034.2Re-query CCDS DB by GeneID:71912See the combined annotation on chromosome 10 in Sequence Viewer

Public Note for CCDS 24034.1
The coding region has been updated to represent an alternative splicing pattern, resulting in a longer N-terminus that is more supported by the available transcript and conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 24034.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000181039.7 ENSMUSP00000137666.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000181039.7Link to Ensembl Protein Viewer:ENSMUSP00000137666.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000181039Re-query CCDS DB by Protein ID:ENSMUSP00000137666
Original member Current member NCBI NM_028001.3 NP_082277.2 Accepted alive Link to Nucleotide Sequence:NM_028001.3Link to Protein Sequence:NP_082277.2Re-query CCDS DB by Nucleotide ID:NM_028001Re-query CCDS DB by Protein ID:NP_082277Link to BLAST:NP_082277.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082277.2 332 Q3MI48-1 332 99.6988% 0 1

Chromosomal Locations for CCDS 24034.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 80808572 80809039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80809146 80809228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80810176 80810364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80810464 80810566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80812067 80812104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80812295 80812412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (999 nt):
ATGACTACCAGAGGCCTGGAGGACCTGGATGGGGGCCTGGGCAGCTGCCTCCCCAGTGATGACCTCCCAT
TTCTGGAGGAACCAGCCTCAGGCCGGCGGCCAGAGAGCAAGGCTCGAGGGACATCCAGGCGGGCCGACTC
CAGTGACTGGACCCATGTCCTTCAGGACCCAGTTGCTGCTGGCGCTGGGGATGCCGGGCTCAAGAAGATG
GAAAAAGAGCTAGCGGGCAAGGAGAGCACAGCTGGCAAAGCGGGAACAAGCCCCCGGATCGTTCCTGCAC
GTAGGAAGCCGCAGGCTCCGCCTCCCCTGCAGCCGCCCCCGCCTCCCCTGCAGCCGCCCCCAAGGACGCC
AAGCGATGACCTGCCCTGGGGAGATCTGACGCTCAACAAGTGCCTGGTACTGGCCTCGCTGGTGGCCCTG
CTGGGCTCGGCTCTTCAGCTGTGTCGGGACGCAGTGGCTGGGGAGGTCGTGGCTGCCCCTCACCCATGGG
TCCCGCCCAGCTCTCCACCAAAGAAGGAAGCGTCGCCAGCGCCTAAGCCTCCGGTTTTGGTGTCTCCATC
CGGGTCTCCTCAGCCGAAGCCTGGGCCACCCCAGGCACGGATGCAGGATGAGCCTGAGCTTCCCGGGAGC
CCTGAAGCTACAGAAACCCGGGTAGAACGTGGAGGGTCCATCTCGGAAGCCTCTGGGGAGGAGAGCGTAC
CCCTTGGGGACCGAGGGTCCCAGGAGAAGCCACGGAAAGAGAAGCCAAGTAAAGGGGAGAAACTGAAGAA
GGAGAAGCCGAGAAGGGAGAAGCCGAGGAGAGAGGATAAGTCACAGGTCACTGGGGAGCCCCGTCAATCA
CTGCCACGGCGCTGGGAGGCGCGGGAAGGAGGCCGTCGGCCATGGGGACGGGACTCCAGGGACCTCCTCG
AGCATGGGAAGCTGCAGGCCTGGGCTCCCCGGCGAAGGCATGACCGTGATGACCGGCCCAGACAGAAGCG
AGGGAAGGGGCGTGACTGA

Translation (332 aa):
MTTRGLEDLDGGLGSCLPSDDLPFLEEPASGRRPESKARGTSRRADSSDWTHVLQDPVAAGAGDAGLKKM
EKELAGKESTAGKAGTSPRIVPARRKPQAPPPLQPPPPPLQPPPRTPSDDLPWGDLTLNKCLVLASLVAL
LGSALQLCRDAVAGEVVAAPHPWVPPSSPPKKEASPAPKPPVLVSPSGSPQPKPGPPQARMQDEPELPGS
PEATETRVERGGSISEASGEESVPLGDRGSQEKPRKEKPSKGEKLKKEKPRREKPRREDKSQVTGEPRQS
LPRRWEAREGGRRPWGRDSRDLLEHGKLQAWAPRRRHDRDDRPRQKRGKGRD


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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