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Report for CCDS24051.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24051.1 Public Mus musculus 10 Tjp3 23 108 98 CCDS HistoryNCBI Gene:27375Re-query CCDS DB by CCDS ID:24051.1Re-query CCDS DB by GeneID:27375See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24051.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045744.6 ENSMUSP00000036438.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045744.6Link to Ensembl Protein Viewer:ENSMUSP00000036438.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000045744Re-query CCDS DB by Protein ID:ENSMUSP00000036438
Original member Current member EBI ENSMUST00000219479.1 ENSMUSP00000151601.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000219479.1Link to Ensembl Protein Viewer:ENSMUSP00000151601.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000219479Re-query CCDS DB by Protein ID:ENSMUSP00000151601
Original member Current member NCBI NM_001282095.1 NP_001269024.1 Accepted alive Link to Nucleotide Sequence:NM_001282095.1Link to Protein Sequence:NP_001269024.1Re-query CCDS DB by Nucleotide ID:NM_001282095Re-query CCDS DB by Protein ID:NP_001269024Link to BLAST:NP_001269024.1
Original member Current member NCBI NM_013769.3 NP_038797.2 Accepted alive Link to Nucleotide Sequence:NM_013769.3Link to Protein Sequence:NP_038797.2Re-query CCDS DB by Nucleotide ID:NM_013769Re-query CCDS DB by Protein ID:NP_038797Link to BLAST:NP_038797.2

Chromosomal Locations for CCDS 24051.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 81273287 81273389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81273649 81273695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81273803 81274069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81274383 81274483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81274580 81274790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81275174 81275244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81276268 81276363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81277196 81277410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81277819 81278065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81278624 81278732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81279195 81279351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81279505 81279571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81279894 81279955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81280083 81280191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81280406 81280565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81280766 81280869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81281105 81281432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81282938 81283040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81283496 81283605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81283683 81283730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2715 nt):
ATGGAAGAGCTGACCATCTGGGAACAACACACAGCCACACTGTACAAGGACCCCCGCCGCGGCTTCGGCA
TAGCTGTCTCTGGAGGCCATGACCGAGCTAGTGGATCCGTGGTGGTGTCTGATGTGGTACCAGGAGGCCC
CGCTGAGGGCCGGCTCCGGACCGGGGACCACATCGTCATGGTGAATGGTGTCTCTGTGGAGAACGTCACA
TCTGCCTTTGCCATCCAGATCCTTAAGACCTGCACCAAAACAGCCAACGTTACAGTGAAGCGTCCCCGCA
GGGTCCAGCTGCCTGCCACCAAGGCTAGCCCAGCTTCTGGCCACCAGCTCTCAGACCAGGAAGAAGCTGA
CCATGGCCGGGGCTATGAGGGGGACTCCTCCAGTGGCTCAGGTCGATCATGGGGTGAGCGTTCTCGCCGG
TCCAGGGCAGGTCGCCGCGGCAGGGTAGGCAGCCATGGGCGCCGGAGTTCGGGTGGCGGATCTGAAGCCA
ACGGTCTGGACCTGGTGTCTGGCTATAAGCGCTTGCCGAAGCAGGATGTGCTAATGAGGCCACTAAAGTC
CGTGCTGGTGAAACGAAGAAACAGCGAAGAGTTTGGGGTGAAGCTAGGCAGTCAGATCTTTATAAAACAC
ATCACGGAATCTGGCCTTGCTGCTCGGAACCATGGGCTGCAGGAGGGAGACCTTATCTTACAGATCAACG
GGGTGTCCAGTGCTAATCTGTCCCTGAGTGACACACGAAGGCTCATTGAGAAGTCGGAGGGGGAGCTGAC
GTTGCTGGTGCTAAGAGACAGTGGGCAGTTCCTGGTGAACATCCCTCCCGCAGTGAGCGACAGCGACAGC
TCCCTAATGGAAGACATCTCAGACCTGACCTCAGAATTGTCCCAGGCGCCCCCTTCCCACGTTCCTCCGC
CACCTCTGAAGGGTCAGAGGAGCCCTGAGGACAGCCAGACAGACTCCCCAGTGGAGACCCCGCAGCCCCG
GAGGCGGGAACGGTCAGTGAATTCAAGAGCCATCGCTGAACCAGAGTCTCCTGGAGAAAGCCGCTATGAC
ATTTACAGGGTTCCTAGCCGGCAGAGCCTGGAGGACCGTGGCTACAGCCCCGACACTCGTGTCGTGAGCT
TCCCCAAGGGCGCGAGTATTGGCTTGCGGCTGGCCGGCGGCAACGACGTGGGCATCTTCGTATCCGGGGT
GCAGGCAGGCAGCCCGGCCGACGGGCAAGGCATCCAGGAAGGGGATGAGATCTTGCAGGTGAATGGTATG
CCATTTCGGAACCTGACTCGGGAGGAGGCCGTGCAGTTTCTGTTGGGGCTGCCTCCAGGGGAAGACATGG
AGCTGGTAACACAGAGCAAACAGGACATCTTTAAGAAGATGGTCCAGTCTCGCGTGGGTGACTCCTTCTA
CATCCGCACACACTTTGAGCTGGAGCCGAGCCCACCCTATGGCCTGGGCTTCACCCGCGGTGATGTCTTC
CACGTAGTGGACACGTTGTACCCGGGCTCCGGGCCAGGCCATGGGCACAGCAGCCATGGGGGCCTCTGGC
TGGCCGCCCGCATGGGCAGAGATCTGCGAGAGCAAGAACGCGGCGTCATCCCCAACCAGAGCAGGGCCGA
GCAGCTGGCCAGTCTGGAGGCTGCGCAGCGGGCCGCGGGCGTGGGGCCAGGCGCCTCAGTGGGTTCCAAC
CCACGGGCGGAGTTTTGGCGACTCCGAGGTCTCCGCCGAGGGACCAAGAAGGCGTCGACCCAGCGGAGCC
GCGAGGACCTATCAGCGCTGACCAGGCAGGGACACTACCCGCCCTATGAGCGTGTGGTGCTCAGAGAAGC
CAGTTTTAAGCGCCCCGTGGTGATCCTAGGACCAGTGGCAGACATTGCCATGAAGAAACTGACCACAGAG
ATGCCAGAAGAGTTTGAGATTGCAGAAAGCATGTCCCGGACTGACAGCCCATCCAAGATCATCAAACTGG
ACACAGTGCGGGTGATCGCAGAGAGGGATAAGCACGCACTCCTGGATGTCACCCCCTCTGCCATCGAGCG
CCTCAACTACGTGCAGTACTACCCCATCGTCATCTTTTGTGCCCCAGAGAGCCGGCCGGCCCTCAAGGCC
CTCCGGGAGTGGCTGGCCCCGGCCTCTCGCCGCAGCAGCCGCCGCCTGTATGCGCAGGCCCAGAAACTGC
AGAAACACAGTGGCCACCTCTTCACCGCCACCATCCCCCTGCATGGCACTAGTGACTCCTGGTACCAGGA
AGTCAAGGCTGTAATACAGCAACAGCAGGCGCGACCGATCTGGACCGCGGAGGACCAGCTGAACAGCTCA
TCCGAGGACCTTGACCTGCCGGGCCATGGTCTGGCCGCCAGCTCTGGAGACCTCAGCTGTGACAGTCGGA
CCAACAGCGACTATGAGGACACCGACGGCGAGGGCGCCTATACGGACAGAGAGGGCGGACCCCAGGATGT
CGATGAGGAGGTCGCACCCACAGCCCTGGCCCGGTCCTCAGAGCCCGTATGGGTAGATGATCACCAGGGG
CTGATGGGTCATGGGACAACTATCACAGACAAATGGGAGACACAGGCTGACAGCCACTACACCCAGGACC
AGCGGCGCCAGGACAGCATGCGGACCTACAAGCACGAGGCCCTGAGGAAGAAGTTCACAAGAGCCCGGGA
TGTGGAATCCTCTGATGACGAGGGCTATGACTGGGGCCCAGCCACCGACCTGTGA

Translation (904 aa):
MEELTIWEQHTATLYKDPRRGFGIAVSGGHDRASGSVVVSDVVPGGPAEGRLRTGDHIVMVNGVSVENVT
SAFAIQILKTCTKTANVTVKRPRRVQLPATKASPASGHQLSDQEEADHGRGYEGDSSSGSGRSWGERSRR
SRAGRRGRVGSHGRRSSGGGSEANGLDLVSGYKRLPKQDVLMRPLKSVLVKRRNSEEFGVKLGSQIFIKH
ITESGLAARNHGLQEGDLILQINGVSSANLSLSDTRRLIEKSEGELTLLVLRDSGQFLVNIPPAVSDSDS
SLMEDISDLTSELSQAPPSHVPPPPLKGQRSPEDSQTDSPVETPQPRRRERSVNSRAIAEPESPGESRYD
IYRVPSRQSLEDRGYSPDTRVVSFPKGASIGLRLAGGNDVGIFVSGVQAGSPADGQGIQEGDEILQVNGM
PFRNLTREEAVQFLLGLPPGEDMELVTQSKQDIFKKMVQSRVGDSFYIRTHFELEPSPPYGLGFTRGDVF
HVVDTLYPGSGPGHGHSSHGGLWLAARMGRDLREQERGVIPNQSRAEQLASLEAAQRAAGVGPGASVGSN
PRAEFWRLRGLRRGTKKASTQRSREDLSALTRQGHYPPYERVVLREASFKRPVVILGPVADIAMKKLTTE
MPEEFEIAESMSRTDSPSKIIKLDTVRVIAERDKHALLDVTPSAIERLNYVQYYPIVIFCAPESRPALKA
LREWLAPASRRSSRRLYAQAQKLQKHSGHLFTATIPLHGTSDSWYQEVKAVIQQQQARPIWTAEDQLNSS
SEDLDLPGHGLAASSGDLSCDSRTNSDYEDTDGEGAYTDREGGPQDVDEEVAPTALARSSEPVWVDDHQG
LMGHGTTITDKWETQADSHYTQDQRRQDSMRTYKHEALRKKFTRARDVESSDDEGYDWGPATDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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