NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS24098.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24098.1 Public Mus musculus 10 Ttc41 23 108 98 CCDS HistoryNCBI Gene:103220Re-query CCDS DB by CCDS ID:24098.1Re-query CCDS DB by GeneID:103220See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24098.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075632.13 ENSMUSP00000075059.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075632.13Link to Ensembl Protein Viewer:ENSMUSP00000075059.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000075632Re-query CCDS DB by Protein ID:ENSMUSP00000075059
Original member Current member NCBI NM_001003910.2 NP_001003910.2 Accepted alive Link to Nucleotide Sequence:NM_001003910.2Link to Protein Sequence:NP_001003910.2Re-query CCDS DB by Nucleotide ID:NM_001003910Re-query CCDS DB by Protein ID:NP_001003910Link to BLAST:NP_001003910.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001003910.2 1318 Q692V3-1 1318 99.6965% 0 4

Chromosomal Locations for CCDS 24098.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 86712944 86713739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86719478 86719664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86724198 86724412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86729782 86729942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86730831 86731266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86733555 86733794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86736801 86736999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86744426 86744604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86750247 86750386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86758258 86758429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86759089 86759236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86760766 86760918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86763864 86763997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86775930 86776059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86776155 86776821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3957 nt):
ATGAGCGACGAGGCAAGTGAGACCGGACAAAGATACAACGGTCAACCCATTTTAAAGCGCCAGAAACCCA
TCCTACCTTACATATGTTCCACTCTAGATTTTCAAGAAGAGAGAGACTTTTTGGCCAAAAGCATCTTCCC
TCGGCTTAATGACATCTGCAGCTCCCGGGGCACCTACTTCAAAGCTGTGGACTTGAGATGGTCAGCTGTG
AAGGCCCATAAGTCCTTCACCAGCAACCAGTTCCGACAGTACTCCTGTCTCCAGTCTCAACACCTGAAAC
TCTCCCTGGACTACGTGAACAGATGCTTCCCGTTTTTCATCGGCCTGCTGGGGCAGACCTACGGAGATTT
CCTCCCCGACTACACACCTTTCCTGTTATCCCAAGTGAAGGACTTCGAAAGTTTATCCAAGGGAGAACAG
AATCTATACATTGCTGCCAAAAATGGTTACCCTTGGGTTCTCAAGACTCCCAACTGCAGCCTGACAGAGT
TCGAGATCATCCAAGCAGTATTCCGGAAGAAATCTCAATTTCAATTTTTCTACTTCCGGACATCAAATTC
GCTGCTGCGAACTTTTAATGAGGAAGAGGAGGAGGAAGAGGAGAAGCTGTCCTCAGCATATCTGTTGAAC
GAACAGGGGAAGATGAAGGTTGGAAAGCTCAAGGCTAAGATCATTGGCAAAGGGCTTCCTGTCAGATTCT
ACAGAGACCTGGAGGAACTGGGGGATATGGTTTGGAAGGACTGGTCGGCTGTTGTGGAAAAGCTCTATCC
ATTCACTACGATCATGGGAAATATAGACTACAAACACAGTTTCGAGAATTTGTATCATGAAGAGTTTGTG
GAGAACTGCAAGCAAGTTTTTGTTACTTCCAAGGAGTCAAACAGAACCTTTGAAATATTGGAAAGATTTG
CTATAAAAGATCTTGATCTTGATCTTGATACTGACAGTACTATAGCAGGTTCGGGGTTAGACTCCATTCT
CAGAATCAATTCCCTTCCAACTTGTAAGTCCATTTTGCTCTTGTCTGGGGAACGCGGCTGTGGGAAGTCC
ACACTGATTGCCAACTGGGTCAGTAATTTCCAAAGCAAACACCCCGGAGTGCTGATGATCCCATACTTTG
TGGGCAGTACGTGTGAGAGCTGTGACATCATGTCTGTGATCCACTACTTCGTCATGGAGCTTCAGCACAG
AGCCAACGGTCCCCGGCTTGAAATGGATTTCCTTAACGAGGACTCAAATGTCTTGGTCTTTTCACTTCTC
GTAGAAGTGTTCATAGCCGCCATAAGCTTAAAGCCATGCATCCTGGTACTAGACGGGATCGAAGAGCTGA
TCGGTATCTATGGGATTTCAGGTCAGAAGGCGAAAGATTTCTCCTGGCTGCCGCGCTCCCTGCCTCCTCA
CTGTAAATTCATTCTGAGCAGCGTCTCCTCCAGTCTGTCCTGCAAGTCGCTGTGTGCCCGCCCTGACGTG
AAGATCGTGGAACTCAACAGCATCGGGGACGAAGACACCAAGTTCAACATCTTCAGACAGCACCTCTCCC
CTGCCGACCAAGAACGCTTCGGGCAGAGCAAGCCCATTTTGAGGAAGAAACCAAACCTGAGCCCTCTGAA
GCTCGCAATCATCGCCAGCGAGCTGCAGGAGTGCAAAATCTACCGCAATGAGTTCCAGTGTCTCCGGGAG
TACTTGGAGGTTGCCTCTGTGCAGGAGCTCTGGGAGTTGATTCTGAAGCGCTGGGTTGAAGATTATAGTT
GGACTTTGAAGCCTAAAGACACAACTCTAGACACCGTGATTCCAGGGCCAAGTGGCTGGGTAGTGGATGT
GCTGTGCTTGCTCTGCATCTCTCACTGCGGGCTGGCTGAGGATGAACTGCTCCAGCTTTTGGACACGATG
GGCTACAGGGACCACCACAAAGTGACGGCGGTGCACTGGGCAGCCTTCCGCCAAGCCACCAAAACCTGGA
TCCAGGAGAAGCCCAATGGTCTCCTCTACTTCCAGCACCAGTCCCTAAGGAGTGCCGTGGAGCACAAGCT
GCTGGGTGTAAGCACTCCGGTGAGAGAGAGCAATCCCAATGTGGCCCAGAACAGCGTGAATCACAAGAAG
GCACATTTCCACCAGGTCTTGATGAGGTTCTTCCAGCGGCAAACCATCTTCTGGAGGGTGTATCAGGAGC
TGCCCTGGCACATGAAGATGAGCGGGTATTGGGAAGGTCTATGTAACTTCATCACGAACCCCAGCATCAC
AGATTTCATATCGAAAATCCAAAACCCAAGCTTGTGGACCAGGCTGCACCTTGTCCACTACTGGGATGTG
CTGCTGGAAGCCGGCAATGACGTGTCTGAGGCTTTTCTGCTCTCTGTTGCCAAGATAGAAGGGGAACAAT
TCCAGAAACTCAAGAAGCGAACCACACTCTCAGTGCTGGAATGCAGCCTGTCCGAGATTACTGCTGCTGA
TAAAGGCAGAATTATCCTCTTTATTGGAAGTTTCCTGAAGCTAATGGGCAAGATCAATGAAGCTGAAAAG
CTGTTCTTGAGCGCTGAGGACTTGTTACTACAGAGCCCATCCATGACAGAAATGCTGCTCAGAGCTCAGA
ATGCCATTGGGGAATTATATCTTGAGATTGGGATGACTCCGAAAGGACTCACATATTTTCAGAAAGCTTG
GTCAAATCTGCTGCGGTTTACACTCAGCGACCTAAAGATCAGCCAGGAATTGATGAAGCAGAAAGTTAAA
GTGATGAATAACCTGGCAAAATCGGCGCCTGGGGAATTCTTAAAAGAAAACCACGTTCTGGAATATGCTA
CCGAAATCTCCAAGTACGTGACTGGTAATCCCCGTGATCATGCTACCATGAAATATACTGAAGGTGTTCT
CATGTTGGCTTCCGGAAACGCAGCCCTGGCAAAACTCAAGTTTCAAGAGTGTTTAACTATCAGAAGATGG
CTATTTGGCAATAAAAACATACTAGTTGGAGAAATTATGGAATTCTTAGCAGATTTACTATTTTTTCTAC
TAGGAGAAAATGAAAAATCTCAAAAGAAGCAAGCAATTGAATATTATAAACAAGTCATAAAAATCAAGGA
GAAGGCAGATACGGTGGCCACCTGCAAGCTTGTGAGGAAGCATCTGAGTATAAGCCTCAGCGACACCTTG
TGTAAACTAGCAGGCCAGCTGTTGTCAGGTGACTTCTGCCATCATGCCACAATGGAGGCAGTCAGCTATT
TGTATAGGTCACTTGATTTAAGGGCAGCTCACCTGGGGCCTACCCACGCTTCCATTGAGGGAATACTACA
CCTTTTAAGGGAAATCCAGAGGTCCCGGGGCAGGAGGTCTTGGCCTCAAAGCATGAACCATCTATTCCCT
AACGGTTCTAGGAATGGCTTTTCATTATGGGAGAATGTGCCTAAATTAAACTTCCACAGCGCTCAGAGTT
CTGACACGGTAAACACTGCAATGTGTATGAATATACGTAGGTTTCAGAGAGTTAAAAGCACACAGCCTTC
TCTGGTTTCAGATAAACCAAAATATGTTCCCGGCAAAGGAAAGAAGACCTTGGCTCCAATTCTGTGCAAG
TCTGCTGAGGAAAAGTTCCAACGTCAGGCTTCAGACTCACAAATATGGAATAGTCCAAGAAGACAACCTG
CCAGGAAAAAGGCAGCCTGTCCCCTTAAGACGGTCTCGCTCATTGACAAGAACGGCTTGGTGAGACTCTC
AAGGCAGAGTGTTTCTTCTGCTGAGCTGGACAGCAGAAAGGGCCTGATCACTTCCATCTGCCGGCAACCC
CTGCAGCTACCTCATAATGTGGACAATCCCTGGAAGTCCATATCGGAACTCGTGTCAGAAAAGTGGCTCT
TCCACACTCCTCAGTACTGCTTCACTCCTCAGAAGCCAGGCTTCCCAAGAAGATCTCAGATTGAATCAAA
ATTGCTGAAGACCTCAGATGACCCCAATAAGGAATAA

Translation (1318 aa):
MSDEASETGQRYNGQPILKRQKPILPYICSTLDFQEERDFLAKSIFPRLNDICSSRGTYFKAVDLRWSAV
KAHKSFTSNQFRQYSCLQSQHLKLSLDYVNRCFPFFIGLLGQTYGDFLPDYTPFLLSQVKDFESLSKGEQ
NLYIAAKNGYPWVLKTPNCSLTEFEIIQAVFRKKSQFQFFYFRTSNSLLRTFNEEEEEEEEKLSSAYLLN
EQGKMKVGKLKAKIIGKGLPVRFYRDLEELGDMVWKDWSAVVEKLYPFTTIMGNIDYKHSFENLYHEEFV
ENCKQVFVTSKESNRTFEILERFAIKDLDLDLDTDSTIAGSGLDSILRINSLPTCKSILLLSGERGCGKS
TLIANWVSNFQSKHPGVLMIPYFVGSTCESCDIMSVIHYFVMELQHRANGPRLEMDFLNEDSNVLVFSLL
VEVFIAAISLKPCILVLDGIEELIGIYGISGQKAKDFSWLPRSLPPHCKFILSSVSSSLSCKSLCARPDV
KIVELNSIGDEDTKFNIFRQHLSPADQERFGQSKPILRKKPNLSPLKLAIIASELQECKIYRNEFQCLRE
YLEVASVQELWELILKRWVEDYSWTLKPKDTTLDTVIPGPSGWVVDVLCLLCISHCGLAEDELLQLLDTM
GYRDHHKVTAVHWAAFRQATKTWIQEKPNGLLYFQHQSLRSAVEHKLLGVSTPVRESNPNVAQNSVNHKK
AHFHQVLMRFFQRQTIFWRVYQELPWHMKMSGYWEGLCNFITNPSITDFISKIQNPSLWTRLHLVHYWDV
LLEAGNDVSEAFLLSVAKIEGEQFQKLKKRTTLSVLECSLSEITAADKGRIILFIGSFLKLMGKINEAEK
LFLSAEDLLLQSPSMTEMLLRAQNAIGELYLEIGMTPKGLTYFQKAWSNLLRFTLSDLKISQELMKQKVK
VMNNLAKSAPGEFLKENHVLEYATEISKYVTGNPRDHATMKYTEGVLMLASGNAALAKLKFQECLTIRRW
LFGNKNILVGEIMEFLADLLFFLLGENEKSQKKQAIEYYKQVIKIKEKADTVATCKLVRKHLSISLSDTL
CKLAGQLLSGDFCHHATMEAVSYLYRSLDLRAAHLGPTHASIEGILHLLREIQRSRGRRSWPQSMNHLFP
NGSRNGFSLWENVPKLNFHSAQSSDTVNTAMCMNIRRFQRVKSTQPSLVSDKPKYVPGKGKKTLAPILCK
SAEEKFQRQASDSQIWNSPRRQPARKKAACPLKTVSLIDKNGLVRLSRQSVSSAELDSRKGLITSICRQP
LQLPHNVDNPWKSISELVSEKWLFHTPQYCFTPQKPGFPRRSQIESKLLKTSDDPNKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH