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Report for CCDS24118.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24118.1 Public Mus musculus 10 Actr6 23 108 98 CCDS HistoryNCBI Gene:67019Re-query CCDS DB by CCDS ID:24118.1Re-query CCDS DB by GeneID:67019See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24118.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020109.4 ENSMUSP00000020109.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020109.4Link to Ensembl Protein Viewer:ENSMUSP00000020109.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000020109Re-query CCDS DB by Protein ID:ENSMUSP00000020109
Original member Current member NCBI NM_025914.3 NP_080190.1 Accepted alive Link to Nucleotide Sequence:NM_025914.3Link to Protein Sequence:NP_080190.1Re-query CCDS DB by Nucleotide ID:NM_025914Re-query CCDS DB by Protein ID:NP_080190Link to BLAST:NP_080190.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080190.1 396 Q9D864 396 99.7475% 0 1

Chromosomal Locations for CCDS 24118.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 89712431 89712560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 89714870 89715008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 89717073 89717244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 89725000 89725078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 89725171 89725269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 89725602 89725658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 89725768 89725903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 89726637 89726760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 89728154 89728222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 89728900 89729017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 89732174 89732241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1191 nt):
ATGACGACCCTAGTTCTGGATAATGGAGCTTACAACGCCAAAATCGGTTACAGCCATGACAGTGTCTCGG
TTATTCCCAATTGTCAGTTCAGATCCAAAACAGCACGTCTTAAAACATTTACTGCTAACCAGATTGATGA
AATAAAAGACCCTTCAGGACTCTTTTATATCCTTCCTTTTCAAAAGGGATACTTGGTGAATTGGGATGTC
CAGCGACAAGTTTGGGATTATCTTTTTGGAAAAGAAATGTATCAGGTTGATTTTTTAGATACTAATATTA
TTATAACAGAACCATATTTTAACTTCACTTCAATCCAAGAATCAATGAATGAAATCCTATTCGAAGAATA
TCAGTTCCAAGCAGTATTAAGAGTAAATGCCGGTGCTCTCAGCGCACACAGGTATTTCCGAGATAACCCT
TCTGAGCTGTGCTGCATCATTGTCGACAGTGGCTATTCCTTCACGCACATTGTTCCTTACTGTAGAAGCA
AAAAGAAAAAAGAAGCAATTATTCGGATAAATGTGGGTGGAAAGCTCTTAACGAACCATCTAAAAGAGAT
CATATCCTACAGGCAGCTGCATGTGATGGATGAAACTCATGTGATTAATCAAGTGAAAGAAGACGTATGC
TACGTGTCTCAGGATTTTTACAGAGACATGGACATTGCCAAGTTAAAAGGAGAAGACAATACAGTGATGA
TTGACTATGTTCTGCCTGACTTCAGCACAATTAAAAAGGGCTTCTGTAAGCCCAGAGAAGAGATGGTGCT
GAGTGGGAAGTATAAATTCGGGGAACAGATTCTTCGCCTTGCCAACGAGAGATTTGCTGTGCCAGAAATA
CTCTTTAACCCCTCTGACATCGGCATTCAGGAGATGGGGATCCCAGAAGCCATTGTCTATTCAATCCAAA
ACCTACCTGAAGAAATGCAGCCACATTTTTTTAAGAACATCGTTTTGACGGGAGGAAATTCCCTTTTCCC
CGGATTCAGAGAGCGTGTTTACTCAGAAGTTCGGTGTTTGACGCCAACAGACTATGACGTTTCTGTCGTG
TTGCCTGAGAACCCCATCACTTACTCCTGGGAAGGTGGGAAGTTGATATCTGAAAACGATGACTTTGAAG
ATATGGTGGTTACAAGAGAAGATTATGAAGAAAATGGACATAGTGTCTGTGAAGAGAAATTTGATATTTA
A

Translation (396 aa):
MTTLVLDNGAYNAKIGYSHDSVSVIPNCQFRSKTARLKTFTANQIDEIKDPSGLFYILPFQKGYLVNWDV
QRQVWDYLFGKEMYQVDFLDTNIIITEPYFNFTSIQESMNEILFEEYQFQAVLRVNAGALSAHRYFRDNP
SELCCIIVDSGYSFTHIVPYCRSKKKKEAIIRINVGGKLLTNHLKEIISYRQLHVMDETHVINQVKEDVC
YVSQDFYRDMDIAKLKGEDNTVMIDYVLPDFSTIKKGFCKPREEMVLSGKYKFGEQILRLANERFAVPEI
LFNPSDIGIQEMGIPEAIVYSIQNLPEEMQPHFFKNIVLTGGNSLFPGFRERVYSEVRCLTPTDYDVSVV
LPENPITYSWEGGKLISENDDFEDMVVTREDYEENGHSVCEEKFDI


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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