NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS24249.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24249.1 Public Mus musculus 10 Zbtb39 23 108 98 CCDS HistoryNCBI Gene:320080Re-query CCDS DB by CCDS ID:24249.1Re-query CCDS DB by GeneID:320080See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24249.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054287.8 ENSMUSP00000052717.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054287.8Link to Ensembl Protein Viewer:ENSMUSP00000052717.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000054287Re-query CCDS DB by Protein ID:ENSMUSP00000052717
Original member Current member NCBI NM_198035.2 NP_932152.1 Accepted alive Link to Nucleotide Sequence:NM_198035.2Link to Protein Sequence:NP_932152.1Re-query CCDS DB by Nucleotide ID:NM_198035Re-query CCDS DB by Protein ID:NP_932152Link to BLAST:NP_932152.1

Chromosomal Locations for CCDS 24249.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 127741559 127743697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2139 nt):
ATGGGCATGAGGATCAAACTGCAAAGCAGCAACCACCCCAACAACCTGCTGAAGGAACTCAACAAGTGCC
GGCTGTCAGAGACCATGTGCGATGTCACCATCGTGGTGGGGAGCCGCTCTTTCCCCGCCCACAAAGCCGT
GCTGGCGTGCGCAGCTGGCTACTTCCAGAACCTCTTCTTAAACACTGGGCTAGATGCTGCGCGGACCTAC
GTGGTGGACTTCATTACCCCTGCCAACTTTGAGAAGATCCTGAGTTTTGTATATACATCAGAGCTCTTCA
CAGACCTGATCAACGTTGGGGTCATCTATGAGGTCGCTGAACGCCTGGGTATGGAGGATCTGCTGCGAGC
CTGCCATTCCACTTTCCCAGACCTAGAGAGCACTGCAATAGCCAAGTCCTTGACCAGCACCAGCGACAGC
CAGTGTGTCACTCTCAGTTGTCCCTCAGTAGATCCCACCCACCCCCTTGGAGAGTCCCGGGGGAGTGGGG
AACACTTCGGTCCTGATAGAAACTATGTGCTGCCTACTGATGCAGGAGGAAGCTACAAAGAGGAAGAGCG
GAGTGTCTCGGGTGACACTAATCATGGCTTGCCCCTGCCACAGCTGCCACTGCCACCAAAGTCGGAAGAC
CACGACACCCCTGTTCCCTTCACGTCTGTTCCTAGTGTGGCAACCCCACCACCAGTCCTAGGCATGGTCA
GCACAGGCATCCAGACCAGCACGAGTTCTTGCCAGCCATACAAAGTTCAAAGCAACGGAGACTTCAGTAA
AAGCACCTTCTTTGCCTCTGATAACGCGGTAGACATTACAACCCAGACCAACTCCTGTTTGAGCAATAGC
GACCACTCCAGAGATCCAAGCTTTGGGCAGATGGATGAGCTCCAGCTGGACGACGTGGGGGACGAGGACC
TGCAGTTTGAGGACCCGGCCGAAGACATCGGGACCGCAGAGGAGGTGATTGAGTTGAGCGACGACAGCGA
GGACGACCTGGCTTTCGGTGACAGTGACAACCGGGAGAATAAGGCCATGCCCTGCCAGGTGTGCAAGAAA
GTTCTAGAGCCCAACATTCAGCTGATACGGCAGCATGCGCGGGACCACGTAGACTTGCTCACAGGCAACT
GCAAGGTCTGTGAGACCCACTTCCAGGACCGAAACTCCCGGGTGACCCATGTCCTGTCTCACATCGGCAT
CTTCCTGTTTTCCTGCGATATGTGTGAGACAAAGTTCTTCACCCAGTGGCAGCTGACCCTGCACCGGCGG
GATGGGATATTTGATAACAACGTCATTGTCCACCCCAGTGAACCCCTGTCTGGGAAACTGGGTCTCTTTC
CAGGGGCAGCCTCCCCGGAGTTGAAATGTGCTGTCTGTGGGAAAGCATTGGCCAAAGATTTCCACGTGGT
CCGTTGCCACATCCTCGAGCACGTGAACTTGAAGGGCCAGGCCTGCAGCATCTGCGATCAGCGCCACCTC
AACCTCTGCAGCCTCATGTGGCACATGCTCTCCCATCTGGGCATCTCAGTCTTCTCCTGTTCGGTCTGTG
CCAGCAGCTTTGTGGACTGGCACCTTCTAGAGAAACACATGGTTGTTCACCAGGGCCTGGAGGATGTCCT
CTTCCGTTGCCACTTGTGCAGCCAGAGCTTCCGGTCAGAGGCAGCCTACCGCTACCACGTCAGCCAGCAC
AAGTGCAGCAGCGGCCTGGACGCGCGGCCTGCTCTGGGACTACCACACCTAGCCCTCCAGAAGCGGAAGC
TGCCCGCCGAGGAGTTTCTGAGCGAAGAGCTGGCTCTGCAGGGCCAGCCTGGGAATAGTAAGTACAGTTG
TAAGGTCTGTGGCAAAAGGTTTGCCCACACAAGCGAGTTCAACTACCACCGGCGGATCCACACAGGCGAG
AAACCTTATCAGTGCAAGGTTTGTCACAAATTCTTCCGAGGTCGCTCGACCATCAAGTGCCACCTCAAGA
CGCATTCAGGGGCGCTCATGTACCGCTGCACAGTCTGCGGCCACTACAGTTCCACCCTTAACCTCATGAG
TAAACACGTCGGGGTGCACAAAGGCAGCCTTCCCCCTGACTTCACCATCGAGCAGACCTTCATGTACATT
ATACATTCCAAAGAGGCTGAGAAGAACCCGGACAGCTGA

Translation (712 aa):
MGMRIKLQSSNHPNNLLKELNKCRLSETMCDVTIVVGSRSFPAHKAVLACAAGYFQNLFLNTGLDAARTY
VVDFITPANFEKILSFVYTSELFTDLINVGVIYEVAERLGMEDLLRACHSTFPDLESTAIAKSLTSTSDS
QCVTLSCPSVDPTHPLGESRGSGEHFGPDRNYVLPTDAGGSYKEEERSVSGDTNHGLPLPQLPLPPKSED
HDTPVPFTSVPSVATPPPVLGMVSTGIQTSTSSCQPYKVQSNGDFSKSTFFASDNAVDITTQTNSCLSNS
DHSRDPSFGQMDELQLDDVGDEDLQFEDPAEDIGTAEEVIELSDDSEDDLAFGDSDNRENKAMPCQVCKK
VLEPNIQLIRQHARDHVDLLTGNCKVCETHFQDRNSRVTHVLSHIGIFLFSCDMCETKFFTQWQLTLHRR
DGIFDNNVIVHPSEPLSGKLGLFPGAASPELKCAVCGKALAKDFHVVRCHILEHVNLKGQACSICDQRHL
NLCSLMWHMLSHLGISVFSCSVCASSFVDWHLLEKHMVVHQGLEDVLFRCHLCSQSFRSEAAYRYHVSQH
KCSSGLDARPALGLPHLALQKRKLPAEEFLSEELALQGQPGNSKYSCKVCGKRFAHTSEFNYHRRIHTGE
KPYQCKVCHKFFRGRSTIKCHLKTHSGALMYRCTVCGHYSSTLNLMSKHVGVHKGSLPPDFTIEQTFMYI
IHSKEAEKNPDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH