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Report for CCDS24258.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24258.1 Public Mus musculus 10 Naca 23 108 98 CCDS HistoryNCBI Gene:17938Re-query CCDS DB by CCDS ID:24258.1Re-query CCDS DB by GeneID:17938See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24258.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073868.8 ENSMUSP00000073532.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073868.8Link to Ensembl Protein Viewer:ENSMUSP00000073532.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000073868Re-query CCDS DB by Protein ID:ENSMUSP00000073532
Original member NCBI NM_001282976.1 NP_001269905.1 Updated not alive Link to Nucleotide Sequence:NM_001282976.1Link to Protein Sequence:NP_001269905.1Re-query CCDS DB by Nucleotide ID:NM_001282976Re-query CCDS DB by Protein ID:NP_001269905
Current member NCBI NM_001282976.2 NP_001269905.1 Accepted alive Link to Nucleotide Sequence:NM_001282976.2Link to Protein Sequence:NP_001269905.1Re-query CCDS DB by Nucleotide ID:NM_001282976Re-query CCDS DB by Protein ID:NP_001269905Link to BLAST:NP_001269905.1
Original member NCBI NM_013608.3 NP_038636.2 Updated not alive Link to Nucleotide Sequence:NM_013608.3Link to Protein Sequence:NP_038636.2Re-query CCDS DB by Nucleotide ID:NM_013608Re-query CCDS DB by Protein ID:NP_038636
Current member NCBI NM_013608.4 NP_038636.2 Accepted alive Link to Nucleotide Sequence:NM_013608.4Link to Protein Sequence:NP_038636.2Re-query CCDS DB by Nucleotide ID:NM_013608Re-query CCDS DB by Protein ID:NP_038636Link to BLAST:NP_038636.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269905.1 215 Q60817-1 215 100% 0 0
NP_038636.2 215 Q60817-1 215 100% 0 0

Chromosomal Locations for CCDS 24258.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 128036491 128036560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128046168 128046253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128046729 128046806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128047658 128047804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128047999 128048127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128048245 128048367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128048493 128048507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (648 nt):
ATGCCCGGTGAAGCCACAGAAACCGTCCCTGCTACAGAGCAGGAGTTGCCACAGCCTCAGGCTGAGACAG
GATCGGGAACAGAGTCTGACAGTGATGAGTCAGTACCAGAGCTCGAGGAACAAGACTCCACACAGACGGC
CACGCAGCAAGCCCAGCTGGCAGCCGCAGCAGAGATCGATGAAGAACCTGTTAGTAAAGCCAAGCAGAGT
CGAAGTGAGAAGAAGGCAAGGAAGGCTATGTCCAAACTGGGTCTTCGACAGGTTACAGGGGTTACGAGAG
TCACTATCCGAAAATCTAAAAATATCCTCTTTGTCATCACAAAACCCGATGTCTACAAGAGCCCAGCTTC
AGACACCTACATAGTGTTTGGGGAAGCCAAGATTGAAGATTTGTCTCAGCAAGCACAGTTAGCAGCTGCT
GAGAAATTCAAAGTTCAAGGTGAAGCTGTTTCAAACATTCAGGAAAACACTCAGACTCCAACCGTCCAAG
AGGAGAGTGAAGAAGAGGAGGTTGATGAGACGGGTGTGGAAGTTAAGGACATAGAACTGGTCATGTCGCA
AGCAAACGTATCAAGAGCAAAGGCTGTTCGAGCCCTGAAAAACAACAGTAATGATATTGTAAATGCTATT
ATGGAATTAACAATGTAA

Translation (215 aa):
MPGEATETVPATEQELPQPQAETGSGTESDSDESVPELEEQDSTQTATQQAQLAAAAEIDEEPVSKAKQS
RSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAA
EKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAI
MELTM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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