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Report for CCDS24512.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24512.1 Public Mus musculus 11 Stc2 23 108 98 CCDS HistoryNCBI Gene:20856Re-query CCDS DB by CCDS ID:24512.1Re-query CCDS DB by GeneID:20856See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24512.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020546.2 ENSMUSP00000020546.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020546.2Link to Ensembl Protein Viewer:ENSMUSP00000020546.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000020546Re-query CCDS DB by Protein ID:ENSMUSP00000020546
Original member Current member NCBI NM_011491.3 NP_035621.1 Accepted alive Link to Nucleotide Sequence:NM_011491.3Link to Protein Sequence:NP_035621.1Re-query CCDS DB by Nucleotide ID:NM_011491Re-query CCDS DB by Protein ID:NP_035621Link to BLAST:NP_035621.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035621.1 296 O88452 296 100% 0 0

Chromosomal Locations for CCDS 24512.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 31360144 31360528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31365332 31365543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31367726 31367868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31369712 31369862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (891 nt):
ATGTGTGCGGAGCGGCTGGGCCAGTTTGTGACCCTGGCTTTGGTGTTTGCCACCTTGGACCCGGCGCAGG
GGACGGACTCCACGAACCCTCCGGAAGGTCCCCAAGACAGGAGCTCGCAGCAGAAAGGCCGTCTGTCCCT
GCAGAACACAGCGGAGATCCAGCACTGTTTGGTCAATGCCGGGGACGTGGGCTGTGGTGTGTTTGAGTGT
TTCGAGAACAACTCTTGTGAAATCCAGGGTTTACATGGGATTTGCATGACGTTTCTGCACAACGCTGGAA
AATTCGATGCCCAGGGAAAGTCATTCATCAAGGATGCCCTGAGGTGCAAGGCCCATGCCCTGCGTCATAA
ATTTGGCTGCATCAGCAGGAAGTGTCCAGCAATTAGGGAAATGGTTTTCCAGTTGCAGAGGGAATGCTAT
CTGAAGCATGACCTGTGCTCCGCAGCCCAGGAGAACGTCGGTGTGATTGTGGAGATGATTCATTTCAAGG
ATCTCCTGCTGCATGAGCCCTATGTGGACCTTGTGAACCTGCTGCTGACCTGCGGGGAAGATGTGAAGGA
GGCAGTCACCCGCAGCGTCCAGGCTCAGTGTGAACAGAGCTGGGGAGGCCTCTGCTCCATCCTGAGTTTC
TGCACCTCCAATATACAGAGACCTCCCACGGCAGCCCCAGAGCATCAGCCCCTGGCAGACAGGGCTCAGC
TCTCCAGGCCTCACCACCGGGACACAGACCATCACCTAACAGCCAACAGAGGTGCCAAGGGTGAGCGAGG
GAGCAAAAGCCACCCGAATGCCCATGCTCGAGGCAGAACCGGTGGCCAGAGCGCTCAGGGACCCTCTGGA
AGCAGTGAGTGGGAGGATGAACAGTCTGAGTATTCCGACATCCGGAGGTGA

Translation (296 aa):
MCAERLGQFVTLALVFATLDPAQGTDSTNPPEGPQDRSSQQKGRLSLQNTAEIQHCLVNAGDVGCGVFEC
FENNSCEIQGLHGICMTFLHNAGKFDAQGKSFIKDALRCKAHALRHKFGCISRKCPAIREMVFQLQRECY
LKHDLCSAAQENVGVIVEMIHFKDLLLHEPYVDLVNLLLTCGEDVKEAVTRSVQAQCEQSWGGLCSILSF
CTSNIQRPPTAAPEHQPLADRAQLSRPHHRDTDHHLTANRGAKGERGSKSHPNAHARGRTGGQSAQGPSG
SSEWEDEQSEYSDIRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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