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Report for CCDS24585.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24585.1 Public Mus musculus 11 Rack1 23 108 98 CCDS HistoryNCBI Gene:14694Re-query CCDS DB by CCDS ID:24585.1Re-query CCDS DB by GeneID:14694See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24585.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020640.7 ENSMUSP00000020640.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020640.7Link to Ensembl Protein Viewer:ENSMUSP00000020640.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000020640Re-query CCDS DB by Protein ID:ENSMUSP00000020640
Original member Current member NCBI NM_008143.3 NP_032169.1 Accepted alive Link to Nucleotide Sequence:NM_008143.3Link to Protein Sequence:NP_032169.1Re-query CCDS DB by Nucleotide ID:NM_008143Re-query CCDS DB by Protein ID:NP_032169Link to BLAST:NP_032169.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032169.1 317 P68040 317 100% 0 0

Chromosomal Locations for CCDS 24585.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 48800464 48800572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 48801663 48801834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 48802273 48802420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 48803404 48803499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 48803858 48803968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 48804156 48804296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 48805545 48805655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 48805980 48806045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (954 nt):
ATGACCGAGCAGATGACCCTTCGCGGGACCCTTAAGGGCCACAATGGATGGGTAACACAGATCGCCACCA
CACCGCAGTTCCCGGACATGATCCTGTCTGCGTCTCGAGACAAGACCATCATCATGTGGAAGCTGACCAG
AGATGAGACCAACTATGGCATACCACAGCGTGCTCTGAGAGGTCACTCCCACTTCGTTAGTGATGTTGTT
ATCTCCTCTGATGGTCAGTTTGCCCTCTCGGGCTCCTGGGACGGAACGCTGCGCCTCTGGGATCTCACAA
CGGGCACCACCACAAGGCGATTTGTCGGCCACACCAAGGATGTGTTGAGCGTGGCCTTCTCCTCTGACAA
CCGGCAGATTGTCTCTGGGTCCCGAGACAAGACCATAAAGTTATGGAATACTCTGGGTGTCTGCAAGTAC
ACGGTCCAGGATGAGAGTCATTCAGAATGGGTGTCTTGTGTCCGCTTCTCCCCGAACAGCAGCAACCCTA
TCATCGTCTCCTGCGGATGGGACAAGCTGGTCAAGGTGTGGAATCTGGCTAACTGCAAGCTAAAGACCAA
CCACATTGGCCACACTGGCTACCTGAACACAGTGACTGTCTCTCCAGATGGATCCCTCTGTGCTTCTGGA
GGCAAGGATGGCCAGGCTATGCTGTGGGATCTCAATGAAGGCAAGCACCTCTACACTTTAGATGGTGGGG
ACATCATCAATGCCTTGTGCTTCAGCCCCAACCGCTACTGGCTCTGCGCTGCCACTGGCCCCAGCATCAA
GATCTGGGACTTGGAGGGCAAGATCATTGTAGATGAATTGAAGCAAGAAGTTATCAGCACCAGCAGCAAG
GCAGAGCCACCCCAGTGTACCTCTTTGGCATGGTCTGCTGATGGCCAGACTCTGTTTGCTGGCTATACAG
ACAACTTGGTGCGAGTATGGCAGGTAACTATTGGTACCCGCTAA

Translation (317 aa):
MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV
ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKY
TVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASG
GKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSK
AEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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