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Report for CCDS24816.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24816.1 Public Mus musculus 11 Epn2 23 108 98 CCDS HistoryNCBI Gene:13855Re-query CCDS DB by CCDS ID:24816.1Re-query CCDS DB by GeneID:13855See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24816.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001063.14 ENSMUSP00000001063.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001063.14Link to Ensembl Protein Viewer:ENSMUSP00000001063.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000001063Re-query CCDS DB by Protein ID:ENSMUSP00000001063
Original member Current member EBI ENSMUST00000178202.7 ENSMUSP00000136553.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178202.7Link to Ensembl Protein Viewer:ENSMUSP00000136553.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178202Re-query CCDS DB by Protein ID:ENSMUSP00000136553
Original member Current member NCBI NM_001362587.1 NP_001349516.1 Accepted alive Link to Nucleotide Sequence:NM_001362587.1Link to Protein Sequence:NP_001349516.1Re-query CCDS DB by Nucleotide ID:NM_001362587Re-query CCDS DB by Protein ID:NP_001349516Link to BLAST:NP_001349516.1
Original member Current member NCBI NM_010148.4 NP_034278.1 Accepted alive Link to Nucleotide Sequence:NM_010148.4Link to Protein Sequence:NP_034278.1Re-query CCDS DB by Nucleotide ID:NM_010148Re-query CCDS DB by Protein ID:NP_034278Link to BLAST:NP_034278.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001349516.1 595 Q8CHU3-1 595 100% 0 0
NP_034278.1 595 Q8CHU3-1 595 100% 0 0

Chromosomal Locations for CCDS 24816.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 61519418 61519707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61521659 61521874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61522406 61522492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61523029 61523193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61532518 61532692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61533571 61533681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61534578 61534613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61535271 61535383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61546150 61546744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1788 nt):
ATGACAACTTCATCTATCAGACGGCAGATGAAAAACATTGTGAACAATTACTCAGAGGCTGAAATCAAAG
TCCGGGAGGCCACCTCCAATGACCCGTGGGGCCCATCCAGCTCTCTGATGACTGAGATTGCTGACCTGAC
CTACAATGTGGTAGCGTTCTCGGAGATCATGAGCATGGTTTGGAAGCGACTTAATGACCATGGCAAGAAC
TGGCGGCATGTATACAAGGCACTGACACTGCTGGACTACCTTATCAAGACAGGTTCTGAGCGGGTGGCCC
AGCAGTGCCGTGAGAACATCTTTGCCATACAGACTCTGAAGGACTTTCAGTACATTGACCGTGATGGCAA
AGACCAGGGTATTAACGTTCGAGAGAAATCAAAGCAACTGGTTGCGCTCCTCAAGGATGAGGAGCGGCTG
AAGGTTGAGAGAGTTCAGGCTCTCAAAACCAAAGAGCGCATGGCTCAGGTGGCCACTGGCGTGGGCAGCA
ACCAAATCACCTTTGGCCGTGGCTCCAGCCAGCCCAACCTTTCTACCAGCTACTCAGAGCAGGAGTATGG
CAAGGCTGGGGGCTCGCCGGCATCCTACCACGGCTCTACTTCCCCACGAGTATCCTCTGAGTTAGAGCAG
GCCCGGCCACAGACAAGCGGAGAAGAGGAGCTGCAGCTACAACTGGCACTTGCCATGAGCAGAGAGGTTG
CTGAGCAGTCATCAGAAAGCGTGCAGACAGCCAGAGGCAGCAAGGAAGAACGCCTCAGGCGGGGTGATGA
CCTCAGATTGCAGATGGCTCTGGAAGAAAGCCGGAGAGACACAGTAAAAGTTCCAAAAAAGAAAGAGGCG
AAAGCTTGTTGCAAGCCAGGCTCCCACTCCCAGCAGACTACCTTGTTGGATTTAATGGATGCCCTCCCCA
GCTCAGGCCCTGTTACACAGAAAACTGAGCCCTGGAGTGCAGGAGCCTCTGCTAACCAGACCAACCCCTG
GGGTGGAACAGTGGCTCCTTCGAACATTACTGACCCGTGGCCATCGTTTGGTACCAAGCCAGCTGCCTCT
GTGGACCCCTGGGGAGTACCTACCACAGCCAGCACACAGTCTGTCCCTAAGAACTCAGACCCTTGGGCAG
CCTCACAGCAGCCTGCCTCCAATGCTGGAAAGACAACAGATGCCTGGGGAGCTGCTAAGCCCAGTTCTGC
CTCAGGGTCCTTTGAGCTCTTCAGTAATTTCAACGGTACAGTTAAAGATGATTTTTCTGAATTTGACAAC
CTTCGAACTTCAAAAAAACCAGCTGAGTCAGGGGCCTCAGTGCCACCCCAGGACAGCAGAACCACGAGCC
CTGACCTCTTTGAGTCTCAATCCTTGACTTCTGCGTCAAGCAAGCCTAGCAGTGCCAGGAAAACACCTGA
GTCCTTCCTGGGCCCCAATGCAGCCCTGGTGAACCTGGACTCATTGGTGACTAAGCCTGCTCCACCAGCT
CAGTCCCTTAATCCCTTCCTGGCACCAGGTGCTGCTGCTCCAGCCCCTGTCAACCCCTTCCAGGTCAACC
AGCCCCAGCCGCTGACACTGAACCAGCTCCGGGGAAGCCCTGTCCTGGGAAGCAGTGCATCCTTTGGGTC
TGGTCCAGGGGTGGAGACTGTGGCTCCCATGACCTCAGTAGCTCCACACTCATCAGTGGGGGCCAGTGGC
TCCTCCTTGACACCACTGGGCCCTACAGCAATGAACATGGTAGGCAGTGTGGGCATTCCCCCATCAGCAG
CTCAGTCAACAGGCACAACAAACCCTTTCCTTCTCTAG

Translation (595 aa):
MTTSSIRRQMKNIVNNYSEAEIKVREATSNDPWGPSSSLMTEIADLTYNVVAFSEIMSMVWKRLNDHGKN
WRHVYKALTLLDYLIKTGSERVAQQCRENIFAIQTLKDFQYIDRDGKDQGINVREKSKQLVALLKDEERL
KVERVQALKTKERMAQVATGVGSNQITFGRGSSQPNLSTSYSEQEYGKAGGSPASYHGSTSPRVSSELEQ
ARPQTSGEEELQLQLALAMSREVAEQSSESVQTARGSKEERLRRGDDLRLQMALEESRRDTVKVPKKKEA
KACCKPGSHSQQTTLLDLMDALPSSGPVTQKTEPWSAGASANQTNPWGGTVAPSNITDPWPSFGTKPAAS
VDPWGVPTTASTQSVPKNSDPWAASQQPASNAGKTTDAWGAAKPSSASGSFELFSNFNGTVKDDFSEFDN
LRTSKKPAESGASVPPQDSRTTSPDLFESQSLTSASSKPSSARKTPESFLGPNAALVNLDSLVTKPAPPA
QSLNPFLAPGAAAPAPVNPFQVNQPQPLTLNQLRGSPVLGSSASFGSGPGVETVAPMTSVAPHSSVGASG
SSLTPLGPTAMNMVGSVGIPPSAAQSTGTTNPFLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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