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Report for CCDS2488.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2488.1 Public Homo sapiens 2 COPS7B 24 110 108 CCDS HistoryNCBI Gene:64708Re-query CCDS DB by CCDS ID:2488.1Re-query CCDS DB by GeneID:64708See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2488.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000350033.8 ENSP00000272995.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000350033.8Link to Ensembl Protein Viewer:ENSP00000272995.5Re-query CCDS DB by Nucleotide ID:ENST00000350033Re-query CCDS DB by Protein ID:ENSP00000272995
Original member Current member EBI ENST00000410024.5 ENSP00000386567.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000410024.5Link to Ensembl Protein Viewer:ENSP00000386567.1Re-query CCDS DB by Nucleotide ID:ENST00000410024Re-query CCDS DB by Protein ID:ENSP00000386567
Original member Current member NCBI NM_001369483.1 NP_001356412.1 Accepted alive Link to Nucleotide Sequence:NM_001369483.1Link to Protein Sequence:NP_001356412.1Re-query CCDS DB by Nucleotide ID:NM_001369483Re-query CCDS DB by Protein ID:NP_001356412Link to BLAST:NP_001356412.1
Original member Current member NCBI NM_022730.4 NP_073567.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022730.4Link to Protein Sequence:NP_073567.1Re-query CCDS DB by Nucleotide ID:NM_022730Re-query CCDS DB by Protein ID:NP_073567Link to BLAST:NP_073567.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001356412.1 264 Q9H9Q2-1 264 100% 0 0
NP_073567.1 264 Q9H9Q2-1 264 100% 0 0

Chromosomal Locations for CCDS 2488.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 231788571 231788732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231791733 231791808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231794263 231794351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231796106 231796308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231798859 231798964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231807487 231807645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (795 nt):
ATGGCAGGGGAACAGAAACCCTCAAGTAATCTCCTGGAGCAGTTTATTTTACTAGCCAAAGGTACCAGTG
GCTCAGCCCTCACTGCTCTCATAAGCCAGGTCTTAGAGGCTCCCGGAGTGTATGTCTTTGGAGAACTTCT
GGAGCTGGCCAACGTGCAGGAGCTTGCGGAAGGAGCTAATGCTGCTTATTTGCAGTTGTTGAACCTGTTT
GCCTATGGGACATACCCAGATTACATAGCCAACAAGGAGAGCCTGCCAGAACTGAGCACAGCTCAGCAGA
ACAAGCTGAAGCATCTTACCATCGTGAGCTTGGCATCAAGAATGAAGTGTATCCCCTACTCCGTGTTGCT
GAAAGACCTGGAGATGCGGAATCTCCGGGAACTAGAAGACCTTATCATTGAGGCTGTCTACACTGACATC
ATCCAGGGCAAGCTGGACCAGCGAAACCAGCTGCTGGAAGTGGATTTCTGCATTGGCCGTGACATCCGAA
AGAAGGATATCAATAATATTGTCAAGACCCTGCATGAATGGTGTGATGGCTGTGAAGCAGTTCTACTGGG
CATCGAGCAGCAAGTTCTGAGAGCCAACCAGTACAAAGAGAACCACAACCGAACTCAGCAGCAGGTAGAA
GCAGAGGTTACCAACATCAAGAAGACACTCAAAGCCACCGCATCCTCCTCGGCTCAGGAGATGGAGCAGC
AGCTGGCTGAACGGGAGTGTCCCCCTCACGCTGAGCAGAGGCAGCCCACCAAGAAGATGTCCAAAGTGAA
AGGTCTGGTCTCCAGCCGCCACTAG

Translation (264 aa):
MAGEQKPSSNLLEQFILLAKGTSGSALTALISQVLEAPGVYVFGELLELANVQELAEGANAAYLQLLNLF
AYGTYPDYIANKESLPELSTAQQNKLKHLTIVSLASRMKCIPYSVLLKDLEMRNLRELEDLIIEAVYTDI
IQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDGCEAVLLGIEQQVLRANQYKENHNRTQQQVE
AEVTNIKKTLKATASSSAQEMEQQLAERECPPHAEQRQPTKKMSKVKGLVSSRH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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