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Report for CCDS25021.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25021.1 Public Mus musculus 11 Or1e1f 23 108 98 CCDS HistoryNCBI Gene:258343Re-query CCDS DB by CCDS ID:25021.1Re-query CCDS DB by GeneID:258343See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25021.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000121280.2 ENSMUSP00000113870.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121280.2Link to Ensembl Protein Viewer:ENSMUSP00000113870.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000121280Re-query CCDS DB by Protein ID:ENSMUSP00000113870
Original member Current member EBI ENSMUST00000216291.1 ENSMUSP00000150172.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216291.1Link to Ensembl Protein Viewer:ENSMUSP00000150172.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216291Re-query CCDS DB by Protein ID:ENSMUSP00000150172
Original member Current member EBI ENSMUST00000213134.1 ENSMUSP00000150369.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213134.1Link to Ensembl Protein Viewer:ENSMUSP00000150369.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213134Re-query CCDS DB by Protein ID:ENSMUSP00000150369
Original member Current member NCBI NM_146346.1 NP_666458.1 Accepted alive Link to Nucleotide Sequence:NM_146346.1Link to Protein Sequence:NP_666458.1Re-query CCDS DB by Nucleotide ID:NM_146346Re-query CCDS DB by Protein ID:NP_666458Link to BLAST:NP_666458.1

Chromosomal Locations for CCDS 25021.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 73964610 73965557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGGAAAGAGGAAATCAAACTGTTGTTTCAGAATTCCTCCTCCTGGGCTTGCCTATTGAACCACACCAGC
AAGACCTTTTCTATGCCCTGTTCCTGTCCATGTACCTCACCACTGCCCTGGGGAACCTCATCATCATCAT
CCTCATTCACCTGGACTCCCATCTCCACACACCCATGTACTTGTTTCTCAGTAACCTGTCCTTCTCTGAC
TTCTGCTTTTCCTCTGTGACCATTCCCAAATTGCTGCAGAACATGCAAAGCCAAGTTCCATCCATACCCT
ATGCAGGTTGCCTGGCACAAATGTACTTTTTCCTGCTTTTTGCAGATCTCGAGAGCTTCCTCCTTGTGGC
CATGGCCTATGATCGCTATGTGGCCATCTGCTTCCCCCTACACTATACTAGCATCATGAGCCCCAAGCTG
TGTCTCTGCCTGGTGGCACTATCTTGGCTACTGACCACAGTCATCTCTTTGTCACACACACTGCTCATGG
CTCGGCTCTCCTTCTGTGCTAACAATGTGATTCCTCACTTTTTCTGTGATATGTCAGCTCTTCTGAAGTT
AGCCTGCTCTGACATTCAGATCAATAAGTTGATGATATTTATCTTGGGAGGACTTGTCATTATTGTCCCA
TTCCTGCTGATATTTTCATCCTATGCACGAATAGTGTCCTCCATTCTCAAGGTCCCCTCTTCTAGAAGCA
TCCGCAAGGCCTTCTCCACCTGTGGTTCCCACCTCTCTGTGGTGTCTCTTTTCTATGGGACAATCATTGG
TCTCTATTTATGTCCATCAGCTAATAATTCAACCATTAAGGAGACTGTCATGGCTGTGATGTACACAGTG
GTGACCCCTATGCTGAACCCCTTTATCTACAGCTTCAGGAATCAGGATATAAAGGGAGCTTTTAAAAAGG
TGTTTTCAAAGCAGATGGCTAACTTTTCTCTGAGATAG

Translation (315 aa):
MERGNQTVVSEFLLLGLPIEPHQQDLFYALFLSMYLTTALGNLIIIILIHLDSHLHTPMYLFLSNLSFSD
FCFSSVTIPKLLQNMQSQVPSIPYAGCLAQMYFFLLFADLESFLLVAMAYDRYVAICFPLHYTSIMSPKL
CLCLVALSWLLTTVISLSHTLLMARLSFCANNVIPHFFCDMSALLKLACSDIQINKLMIFILGGLVIIVP
FLLIFSSYARIVSSILKVPSSRSIRKAFSTCGSHLSVVSLFYGTIIGLYLCPSANNSTIKETVMAVMYTV
VTPMLNPFIYSFRNQDIKGAFKKVFSKQMANFSLR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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