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Report for CCDS25021.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
25021.1 |
Public |
Mus musculus |
11 |
Or1e1f |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:258343](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:25021.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:258343](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 11 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Provisional (this record has not been manually reviewed by the collaboration) Sequence IDs included in CCDS 25021.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000121280.2 |
ENSMUSP00000113870.2 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000121280.2](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000113870.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000121280](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000113870](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000216291.1 |
ENSMUSP00000150172.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000216291.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000150172.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000216291](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000150172](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000213134.1 |
ENSMUSP00000150369.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000213134.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000150369.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000213134](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000150369](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_146346.1 |
NP_666458.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_146346.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_666458.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_146346](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_666458](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_666458.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 25021.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (948 nt): ATGGAAAGAGGAAATCAAACTGTTGTTTCAGAATTCCTCCTCCTGGGCTTGCCTATTGAACCACACCAGC AAGACCTTTTCTATGCCCTGTTCCTGTCCATGTACCTCACCACTGCCCTGGGGAACCTCATCATCATCAT CCTCATTCACCTGGACTCCCATCTCCACACACCCATGTACTTGTTTCTCAGTAACCTGTCCTTCTCTGAC TTCTGCTTTTCCTCTGTGACCATTCCCAAATTGCTGCAGAACATGCAAAGCCAAGTTCCATCCATACCCT ATGCAGGTTGCCTGGCACAAATGTACTTTTTCCTGCTTTTTGCAGATCTCGAGAGCTTCCTCCTTGTGGC CATGGCCTATGATCGCTATGTGGCCATCTGCTTCCCCCTACACTATACTAGCATCATGAGCCCCAAGCTG TGTCTCTGCCTGGTGGCACTATCTTGGCTACTGACCACAGTCATCTCTTTGTCACACACACTGCTCATGG CTCGGCTCTCCTTCTGTGCTAACAATGTGATTCCTCACTTTTTCTGTGATATGTCAGCTCTTCTGAAGTT AGCCTGCTCTGACATTCAGATCAATAAGTTGATGATATTTATCTTGGGAGGACTTGTCATTATTGTCCCA TTCCTGCTGATATTTTCATCCTATGCACGAATAGTGTCCTCCATTCTCAAGGTCCCCTCTTCTAGAAGCA TCCGCAAGGCCTTCTCCACCTGTGGTTCCCACCTCTCTGTGGTGTCTCTTTTCTATGGGACAATCATTGG TCTCTATTTATGTCCATCAGCTAATAATTCAACCATTAAGGAGACTGTCATGGCTGTGATGTACACAGTG GTGACCCCTATGCTGAACCCCTTTATCTACAGCTTCAGGAATCAGGATATAAAGGGAGCTTTTAAAAAGG TGTTTTCAAAGCAGATGGCTAACTTTTCTCTGAGATAG
Translation (315 aa): MERGNQTVVSEFLLLGLPIEPHQQDLFYALFLSMYLTTALGNLIIIILIHLDSHLHTPMYLFLSNLSFSD FCFSSVTIPKLLQNMQSQVPSIPYAGCLAQMYFFLLFADLESFLLVAMAYDRYVAICFPLHYTSIMSPKL CLCLVALSWLLTTVISLSHTLLMARLSFCANNVIPHFFCDMSALLKLACSDIQINKLMIFILGGLVIIVP FLLIFSSYARIVSSILKVPSSRSIRKAFSTCGSHLSVVSLFYGTIIGLYLCPSANNSTIKETVMAVMYTV VTPMLNPFIYSFRNQDIKGAFKKVFSKQMANFSLR
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