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Report for CCDS25073.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25073.1 Public Mus musculus 11 Blmh 23 108 98 CCDS HistoryNCBI Gene:104184Re-query CCDS DB by CCDS ID:25073.1Re-query CCDS DB by GeneID:104184See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25073.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021197.9 ENSMUSP00000021197.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021197.9Link to Ensembl Protein Viewer:ENSMUSP00000021197.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000021197Re-query CCDS DB by Protein ID:ENSMUSP00000021197
Original member Current member NCBI NM_178645.4 NP_848760.1 Accepted alive Link to Nucleotide Sequence:NM_178645.4Link to Protein Sequence:NP_848760.1Re-query CCDS DB by Nucleotide ID:NM_178645Re-query CCDS DB by Protein ID:NP_848760Link to BLAST:NP_848760.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848760.1 455 Q8R016 455 100% 0 0

Chromosomal Locations for CCDS 25073.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 76945881 76945893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76946242 76946439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76949960 76950069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76951044 76951185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76952501 76952589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76954510 76954602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76965815 76965970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76966732 76966890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76966994 76967061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76968603 76968720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76971909 76971978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76986476 76986627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1368 nt):
ATGAACAACGCAGGACTAAATTCGGAGAAGGTATCTGCTTTGATCCAGAAACTAAATTCTGACCCTCAGT
TCGTACTTGCCCAGAATGTCGGGACCACCCACGATCTGCTGGACATATGTCTGAGGAGGGCCACGGTCCA
GGGTGCTCAGCATGTGTTTCAACACGTTGTGCCTCAGGAAGGCAAGCCAGTCACCAACCAGAAGAGCTCT
GGACGATGCTGGATCTTTTCTTGTTTGAATGTTATGAGACTTCCATTCATGAAAAAATTTAACATTGAAG
AATTTGAGTTTAGTCAATCTTACCTGTTTTTTTGGGACAAGGTTGAACGCTGTTATTTCTTCTTGAATGC
TTTTGTGGACACAGCTCAGAAAAAGGAGCCTGAAGATGGGAGACTGGTGCAGTATTTGCTTATGAACCCT
ACAAATGATGGTGGACAGTGGGATATGCTTGTCAATATTGTTGAAAAATACGGTGTTGTTCCTAAGAAAT
GCTTTCCCGAATCGCATACGACAGAGGCTACCAGAAGAATGAATGATATTCTGAATCACAAGATGAGAGA
ATTCTGTATACGGCTTCGGAACCTGGTACACAGTGGAGCCACCAAAGGGGAGATCTCATCTACACAAGAT
GCCATGATGGAGGAGATATTCAGAGTGGTGTGCATCTGTTTGGGCAACCCACCAGAGACCTTCACCTGGG
AGTACCGAGACAAAGATAAAAATTACCACAAGATTGGCCCCATAACACCCTTGCAGTTTTACAAGGAGCA
CGTGAAGCCGCTCTTCAATATGGAAGATAAGATTTGTTTTGTGAATGACCCACGGCCCCAGCACAAGTAC
AATAAATTGTACACAGTAGACTACTTGAGCAATATGGTTGGAGGGAGAAAAACGCTGTATAACAACCAGC
CCATTGACTTCTTGAAAAAGATGGTTGCTGCCTCCATCAAAGATGGAGAGGCTGTGTGGTTTGGCTGTGA
TGTTGGAAAACACTTCAATGGCAAGCTGGGCCTCAGTGACATGAATGTCTATGACCATGAGTTAGTGTTC
GGTGTCTCCTTGAAGAACATGAATAAAGCTGAGAGGTTGGCTTTTGGTGAGTCACTCATGACCCACGCCA
TGACCTTCACTGCTGTCTCAGAGAAGGATAATCAGGAAGGTACTTTTGTGAAATGGAGAGTAGAGAATTC
ATGGGGTGAAGACCACGGCCACAAAGGCTACCTGTGCATGACCGATGAGTGGTTCTCGGAGTACGTCTAC
GAGGTGGTGGTGGACAAGAAGCATGTCCCGGAAGAGGTGCTGGCTGTGTTAGAGCAGGAGCCCATTGTCC
TGCCGGCATGGGACCCCATGGGGGCTTTGGCTGAGTGA

Translation (455 aa):
MNNAGLNSEKVSALIQKLNSDPQFVLAQNVGTTHDLLDICLRRATVQGAQHVFQHVVPQEGKPVTNQKSS
GRCWIFSCLNVMRLPFMKKFNIEEFEFSQSYLFFWDKVERCYFFLNAFVDTAQKKEPEDGRLVQYLLMNP
TNDGGQWDMLVNIVEKYGVVPKKCFPESHTTEATRRMNDILNHKMREFCIRLRNLVHSGATKGEISSTQD
AMMEEIFRVVCICLGNPPETFTWEYRDKDKNYHKIGPITPLQFYKEHVKPLFNMEDKICFVNDPRPQHKY
NKLYTVDYLSNMVGGRKTLYNNQPIDFLKKMVAASIKDGEAVWFGCDVGKHFNGKLGLSDMNVYDHELVF
GVSLKNMNKAERLAFGESLMTHAMTFTAVSEKDNQEGTFVKWRVENSWGEDHGHKGYLCMTDEWFSEYVY
EVVVDKKHVPEEVLAVLEQEPIVLPAWDPMGALAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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