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Report for CCDS25105.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25105.1 Public Mus musculus 11 Sarm1 23 108 98 CCDS HistoryNCBI Gene:237868Re-query CCDS DB by CCDS ID:25105.1Re-query CCDS DB by GeneID:237868See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25105.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061174.6 ENSMUSP00000051059.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061174.6Link to Ensembl Protein Viewer:ENSMUSP00000051059.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000061174Re-query CCDS DB by Protein ID:ENSMUSP00000051059
Original member Current member NCBI NM_172795.3 NP_766383.2 Accepted alive Link to Nucleotide Sequence:NM_172795.3Link to Protein Sequence:NP_766383.2Re-query CCDS DB by Nucleotide ID:NM_172795Re-query CCDS DB by Protein ID:NP_766383Link to BLAST:NP_766383.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766383.2 724 Q6PDS3-1 724 100% 0 0

Chromosomal Locations for CCDS 25105.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 78474903 78475032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78475207 78475328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78483157 78483346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78483434 78483536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78487223 78487458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78487564 78487655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78487916 78488128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78490567 78491185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78496989 78497458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2175 nt):
ATGGTCCTGACGCTGCTCTTCTCCGCCTACAAACTGTGCCGCTTCTTCACCATGTCAGGCCCACGGCCGG
GCGCCGATCGGCTGACAGTGCCCGGACCGGATCGGAGTGGTGGCGCCAGCCCATGGTGGGCTGCGGGCGG
TCGCGGGTCTCGCGAAGTGTCGCCCGGAGTGGGCACTGAGGTGCAAGGCGCCCTGGAGCGTTCGCTGCCT
GAGCTGCAGCAGGCGCTGTCCGAGCTGAAACAGGCAAGCGCGGCGCGGGCTGTGGGCGCGGGTCTCGCCG
AGGTCTTCCAGCTGGTAGAGGAAGCCTGGCTGCTGCCGGCCGTGGGCCGCGAGGTGGCCCAAGGTCTATG
CGATGCTATACGTCTGGACGGTGGCCTCGACTTGCTGTTGCGGCTGCTTCAGGCACCGGAGCTAGAGACC
CGTGTGCAGGCCGCGCGCTTGCTGGAGCAGATCCTGGTGGCTGAGAACCGGGACCGCGTGGCGCGCATCG
GTCTAGGCGTGATCTTGAACCTGGCGAAGGAGCGCGAGCCTGTGGAACTGGCACGAAGCGTGGCGGGCAT
CTTGGAGCACATGTTCAAGCACTCGGAGGAGACGTGCCAGCGGCTGGTGGCGGCCGGAGGCCTCGACGCG
GTGCTGTACTGGTGCCGCCGCACAGACCCGGCGCTGCTGCGCCACTGCGCTCTTGCGCTGGCGAACTGCG
CGCTGCACGGGGGCCAGACGGTGCAGCGGTGCATGGTGGAGAAGCGCGCCGCCGAGTGGCTCTTCCCGCT
CGCTTTCTCCAAGGAGGACGAGCTGCTGCGGCTGCACGCCTGCCTGGCGGTGGCGGTGTTGGCTACCAAC
AAGGAGGTGGAACGCGAGGTCGAGCATTCTGGCACATTGGCGCTTGTCGAGCCGCTCGTGGCATCGCTGG
ACCCCGGCCGCTTCGCCCGCTGCCTGGTGGATGCCAGTGACACAAGCCAGGGTCGTGGACCAGACGACCT
GCAGAGCCTGGTGCTGTTGCTCGATTCGTCGCGTTTGGAGGCTCAGTGCATAGGAGCATTCTACCTGTGC
GCAGAGGCTGCCATCAAGAGCCTACAGGGAAAGACCAAGGTGTTCAGCGACATCGGCGCTATCCAGAGCC
TGAAACGCCTGGTTTCTTACTCTACGAATGGCACCACGTCGGCGCTGGCCAAGCGCGCGCTGCGCCTATT
GGGCGAGGAGGTGCCAAGGCGCATCCTGCCCTGCGTGGCCAGCTGGAAGGAAGCTGAGGTCCAGACCTGG
CTACAGCAGATCGGCTTCTCCCAGTACTGCGAGAACTTTCGGGAGCAGCAGGTAGATGGTGACCTGCTTC
TAAGACTCACAGATGAAGAACTCCAGACAGACCTAGGCATGAAATCAAGCATCACCCGCAAGAGGTTCTT
TAGGGAGCTCACAGAGCTCAAGACCTTCGCCAGCTACGCTACTTGCGACCGCAGCAACCTAGCGGACTGG
CTGGGCAGCCTGGATCCTCGCTTCCGCCAGTACACCTATGGCCTGGTCAGCTGCGGTCTGGACCGCTCCC
TGCTGCACCGCGTGTCAGAGCAGCAGCTCCTGGAGGACTGTGGCATCCGCCTGGGAGTGCACCGCACGCG
CATCCTCTCTGCAGCCAGAGAAATGCTACATTCCCCGCTGCCCTGTACTGGAGGCAAGCTCAGTGGGGAC
ACCCCAGATGTCTTTATCAGTTACCGGAGGAACTCAGGGTCCCAGCTGGCCAGCCTCCTGAAGGTGCACC
TGCAGCTTCACGGCTTCAGCGTCTTCATCGACGTGGAGAAGCTGGAAGCCGGCAAATTCGAGGACAAGCT
TATCCAAAGCGTCATAGCGGCTCGCAATTTTGTCCTGGTGCTGTCTGCTGGGGCGCTGGATAAGTGCATG
CAGGACCATGACTGCAAGGACTGGGTGCACAAGGAGATTGTGACTGCTTTAAGCTGTGGCAAGAACATTG
TGCCCATCATTGATGGCTTTGAGTGGCCTGAGCCTCAGGCGCTGCCTGAGGATATGCAGGCTGTACTCAC
CTTCAACGGCATCAAATGGTCCCATGAGTACCAGGAGGCCACCATCGAGAAGATCATCCGCTTCCTACAG
GGCCGCCCCTCTCAGGACTCCTCTGCCGGATCGGATACCAGTTTGGAGGGAGCTACGCCAATGGGTCTGC
CTTAA

Translation (724 aa):
MVLTLLFSAYKLCRFFTMSGPRPGADRLTVPGPDRSGGASPWWAAGGRGSREVSPGVGTEVQGALERSLP
ELQQALSELKQASAARAVGAGLAEVFQLVEEAWLLPAVGREVAQGLCDAIRLDGGLDLLLRLLQAPELET
RVQAARLLEQILVAENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHSEETCQRLVAAGGLDA
VLYWCRRTDPALLRHCALALANCALHGGQTVQRCMVEKRAAEWLFPLAFSKEDELLRLHACLAVAVLATN
KEVEREVEHSGTLALVEPLVASLDPGRFARCLVDASDTSQGRGPDDLQSLVLLLDSSRLEAQCIGAFYLC
AEAAIKSLQGKTKVFSDIGAIQSLKRLVSYSTNGTTSALAKRALRLLGEEVPRRILPCVASWKEAEVQTW
LQQIGFSQYCENFREQQVDGDLLLRLTDEELQTDLGMKSSITRKRFFRELTELKTFASYATCDRSNLADW
LGSLDPRFRQYTYGLVSCGLDRSLLHRVSEQQLLEDCGIRLGVHRTRILSAAREMLHSPLPCTGGKLSGD
TPDVFISYRRNSGSQLASLLKVHLQLHGFSVFIDVEKLEAGKFEDKLIQSVIAARNFVLVLSAGALDKCM
QDHDCKDWVHKEIVTALSCGKNIVPIIDGFEWPEPQALPEDMQAVLTFNGIKWSHEYQEATIEKIIRFLQ
GRPSQDSSAGSDTSLEGATPMGLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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