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Report for CCDS25110.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25110.1 Public Mus musculus 11 Tnfaip1 23 108 98 CCDS HistoryNCBI Gene:21927Re-query CCDS DB by CCDS ID:25110.1Re-query CCDS DB by GeneID:21927See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25110.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000017759.8 ENSMUSP00000017759.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000017759.8Link to Ensembl Protein Viewer:ENSMUSP00000017759.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000017759Re-query CCDS DB by Protein ID:ENSMUSP00000017759
Original member Current member EBI ENSMUST00000108277.2 ENSMUSP00000103912.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108277.2Link to Ensembl Protein Viewer:ENSMUSP00000103912.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108277Re-query CCDS DB by Protein ID:ENSMUSP00000103912
Original member Current member NCBI NM_001159392.1 NP_001152864.1 Accepted alive Link to Nucleotide Sequence:NM_001159392.1Link to Protein Sequence:NP_001152864.1Re-query CCDS DB by Nucleotide ID:NM_001159392Re-query CCDS DB by Protein ID:NP_001152864Link to BLAST:NP_001152864.1
Original member Current member NCBI NM_009395.4 NP_033421.3 Accepted alive Link to Nucleotide Sequence:NM_009395.4Link to Protein Sequence:NP_033421.3Re-query CCDS DB by Nucleotide ID:NM_009395Re-query CCDS DB by Protein ID:NP_033421Link to BLAST:NP_033421.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001152864.1 316 O70479 316 100% 0 0
NP_033421.3 316 O70479 316 100% 0 0

Chromosomal Locations for CCDS 25110.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 78525305 78525541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78527526 78527721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78528251 78528303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78528390 78528479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78529070 78529239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78530028 78530232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (951 nt):
ATGTCAGGGGACACCTGTCTGTGTCCAGCCTCGGGGGCCAAGCCCAAGATCAGTGGCTTCAAGGGAGGCG
GGCTGGGCAACAAGTACGTGCAGCTCAATGTGGGAGGCTCCCTGTACTACACCACAGTGCGGGCCCTCAC
CCGGCACGACACCATGCTCAAGGCCATGTTCAGTGGGCGAATGGAGGTGCTGACTGACAAAGAAGGCTGG
ATTCTCATAGACCGATGTGGAAAGCACTTTGGCACCATCTTGAATTACCTCCGAGATGACACCATCACCC
TCCCTCAAAGCCGGCAAGAAATCCAGGAGTTGATGGCTGAAGCAAAATATTACCTCATTCAAGGGCTGGT
GAGCACGTGCCAGACTGCCCTGCAGGACAAGAAAGACTCCTACCAGCCTGTGTGCAACATCCCCATCATC
ACGTCCCTGAGGGAGGAGGACAGGCTCATTGAATCCTCCACAAAGCCTGTGGTGAAGCTGCTGTACAACA
GGAGCAACAACAAGTACTCATACACCAGCAACTCTGATGATCACCTGCTAAAGAACATTGAACTGTTTGA
CAAGCTGTCCCTGCGCTTCAACGGCCGCGTGCTCTTCATCAAGGATGTCATTGGGGACGAGATCTGCTGC
TGGTCTTTCTATGGCCAGGGCCGTAAGCTGGCAGAGGTGTGCTGCACCTCGATTGTGTACGCCACAGAGA
AGAAGCAGACCAAGGTGGAATTCCCAGAGGCCCGTATCTATGAGGAAACACTCAATGTCCTACTCTATGA
GACCCCTCGAGTCCCTGACAATTCCTTACTGGAGGCCACAAGCCGGAGCCGCAGCCAGGCTTCCCCCAGT
GAAGATGAAGACACCTTTGAACTACGGGACCGTGTCCGTCGCATTCATGTCAAGCGCTATAGCACTTACG
ATGACCGGCAACTTGGCCATCAGTCCACTCATCGTGACTGA

Translation (316 aa):
MSGDTCLCPASGAKPKISGFKGGGLGNKYVQLNVGGSLYYTTVRALTRHDTMLKAMFSGRMEVLTDKEGW
ILIDRCGKHFGTILNYLRDDTITLPQSRQEIQELMAEAKYYLIQGLVSTCQTALQDKKDSYQPVCNIPII
TSLREEDRLIESSTKPVVKLLYNRSNNKYSYTSNSDDHLLKNIELFDKLSLRFNGRVLFIKDVIGDEICC
WSFYGQGRKLAEVCCTSIVYATEKKQTKVEFPEARIYEETLNVLLYETPRVPDNSLLEATSRSRSQASPS
EDEDTFELRDRVRRIHVKRYSTYDDRQLGHQSTHRD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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