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Report for CCDS25196.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25196.1 Public Mus musculus 11 Tbx4 23 108 98 CCDS HistoryNCBI Gene:21387Re-query CCDS DB by CCDS ID:25196.1Re-query CCDS DB by GeneID:21387See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25196.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000096.11 ENSMUSP00000000096.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000096.11Link to Ensembl Protein Viewer:ENSMUSP00000000096.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000000096Re-query CCDS DB by Protein ID:ENSMUSP00000000096
Original member Current member EBI ENSMUST00000108047.7 ENSMUSP00000103682.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108047.7Link to Ensembl Protein Viewer:ENSMUSP00000103682.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108047Re-query CCDS DB by Protein ID:ENSMUSP00000103682
Original member Current member NCBI NM_011536.3 NP_035666.2 Accepted alive Link to Nucleotide Sequence:NM_011536.3Link to Protein Sequence:NP_035666.2Re-query CCDS DB by Nucleotide ID:NM_011536Re-query CCDS DB by Protein ID:NP_035666Link to BLAST:NP_035666.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035666.2 552 P70325 552 100% 0 0

Chromosomal Locations for CCDS 25196.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 85890063 85890263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85890857 85890951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85898493 85898612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85899750 85899897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85911107 85911259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85911936 85912024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85912106 85912341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85914129 85914745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1659 nt):
ATGCTGCAGGATAAGGGCCTGTCCGAGAGCGAGGAGGCCTTCAGGGCCCCGGGCCCAGCTCTCGGGGAGG
CCAGCAACACTAGCACCACCAACGCCCCCGAACCCGCGCTGGCCACGCCGGGCCTTAGTGGAGCAGCGCT
CAGCAGCCCACCGGGCCAGGGCGCCGACGTCGCCGCCGCCGCCGCTGCCGCCGCGGAGCAGACCATCGAG
AACATCAAGGTGGGGCTGCATGAGAAGGAGCTGTGGAAGAAGTTCCACGAGGCAGGCACGGAGATGATCA
TCACCAAGGCCGGCAGGAGGATGTTCCCCAGCTACAAGGTAAAAGTCACAGGCATGAACCCCAAGACCAA
GTACATACTTCTCATCGACATCGTCCCCGCAGATGACCATCGCTACAAGTTCTGTGACAACAAATGGATG
GTCGCAGGGAAGGCTGAGCCGGCCATGCCAGGAAGACTTTATGTGCACCCGGATTCTCCTGCCACCGGGG
CTCACTGGATGCGGCAGTTGGTCTCTTTCCAGAAGCTGAAGCTGACAAACAACCACCTGGACCCCTTTGG
CCATATCATCCTCAACTCCATGCATAAGTACCAGCCAAGGCTGCACATCGTTAAGGCCGACGAGAACAAT
GCTTTTGGCTCCAAAAACACAGCCTTTTGCACCCACGTGTTCCCAGAGACCTCCTTCATCTCTGTGACCT
CCTACCAGAACCACAAGATCACCCAGCTGAAAATTGAGAACAACCCTTTTGCCAAGGGATTCCGGGGCAG
CGATGACAGTGACCTGCGTGTGGCCCGGTTGCAGAGCAAGGAGTATCCCGTGATCTCCAAAAGCATCATG
AGGCAGAGGCTCGTTTCCAGCCAACTCTCGGCTAAGCCAGATGTCAGCCCCCTGCACAGCGCACACCAGG
CCCTGCAGCACTACCAGTATGAGAATGGGGCCCACATGCAGTTTGCTGCTGCAGAGCCCCAGGACCTGCC
CCTCAACACCTTCCCAACTCAGAGGGACTCCAGCCTCTTCTACCACTGCCTGAAGCGTAGAGACAGTGCC
CGCCACCTGGACTTGCCCTGCAAGCGATCCTACCTGGAAACCCCCTCTTCAGTGGGGGACGATCACTATT
TCCGTTCTCCCCCTCCCTACGACCAGCAGATGCTGAGCCCTTCTTATTGCAGTGAGGTGACCCCCAGAGA
AGCCTGTATGTACTCGAGTTCGGGGCCTGAGATCGCAGGGGTGTCAGCCGTGGACGACCTGCCCCCACCC
CCACTGAGCTGTAACATGTGGACGTCGGTGTCGCCATACACCAGCTACAGCGTTCAGACCATGGAGACTG
TGCCTTACCAGCCCTTCCCCGCACACTTTACTGCCACCACAGTGATGCCTCGGCTGCCCACCATCGCCGC
CCAGAGCGCCCAGCCACCAGGAAATGCCCACTTTAGTGTGTACAATCAGCTATCCCAGTCTCAGGTCCGA
GAGCGGGGGCCCTCTGCTTCCTTCCCTAGAGAGCGTGGCCTCCCTGGGATGTGTGAGAGGAAGCCACCCT
CACCTCACCTGAACACTGCCAACGAGTTCCTCTACTCACAGAGCTTCTCCTTGACCCGGGAGTCATCCTT
ACAGTATCATTCAGGGATGGGGACTGTGGAGAACTGGACCGATGGATGA

Translation (552 aa):
MLQDKGLSESEEAFRAPGPALGEASNTSTTNAPEPALATPGLSGAALSSPPGQGADVAAAAAAAAEQTIE
NIKVGLHEKELWKKFHEAGTEMIITKAGRRMFPSYKVKVTGMNPKTKYILLIDIVPADDHRYKFCDNKWM
VAGKAEPAMPGRLYVHPDSPATGAHWMRQLVSFQKLKLTNNHLDPFGHIILNSMHKYQPRLHIVKADENN
AFGSKNTAFCTHVFPETSFISVTSYQNHKITQLKIENNPFAKGFRGSDDSDLRVARLQSKEYPVISKSIM
RQRLVSSQLSAKPDVSPLHSAHQALQHYQYENGAHMQFAAAEPQDLPLNTFPTQRDSSLFYHCLKRRDSA
RHLDLPCKRSYLETPSSVGDDHYFRSPPPYDQQMLSPSYCSEVTPREACMYSSSGPEIAGVSAVDDLPPP
PLSCNMWTSVSPYTSYSVQTMETVPYQPFPAHFTATTVMPRLPTIAAQSAQPPGNAHFSVYNQLSQSQVR
ERGPSASFPRERGLPGMCERKPPSPHLNTANEFLYSQSFSLTRESSLQYHSGMGTVENWTDG


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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