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Report for CCDS2524.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2524.3 Public Homo sapiens 2 SCLY 24 110 108 CCDS HistoryNCBI Gene:51540Re-query CCDS DB by CCDS ID:2524.3Re-query CCDS DB by GeneID:51540See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 2524.1
The coding region has been restored to the original sequence and begins from a better supported downstream start codon.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 2524.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000254663.12 ENSP00000254663.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000254663.12Link to Ensembl Protein Viewer:ENSP00000254663.7Re-query CCDS DB by Nucleotide ID:ENST00000254663Re-query CCDS DB by Protein ID:ENSP00000254663
Original member Current member NCBI NM_016510.7 NP_057594.5 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016510.7Link to Protein Sequence:NP_057594.5Re-query CCDS DB by Nucleotide ID:NM_016510Re-query CCDS DB by Protein ID:NP_057594Link to BLAST:NP_057594.5

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057594.5 445 Q96I15-1 445 100% 0 0

Chromosomal Locations for CCDS 2524.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 238061055 238061143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 238064357 238064469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 238068065 238068165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 238069297 238069477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 238081709 238081836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 238082045 238082209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 238083248 238083354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 238091218 238091254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 238093861 238093944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 238094420 238094522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 238096801 238096876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 238098202 238098355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1338 nt):
ATGGAGGCGGCCGTGGCGCCGGGGAGGGATGCGCCGGCACCCGCGGCGAGTCAGCCCAGCGGCTGCGGGA
AACACAACTCGCCGGAGAGGAAAGTTTATATGGACTATAATGCAACGACTCCCCTGGAGCCAGAAGTTAT
CCAGGCCATGACCAAGGCCATGTGGGAAGCCTGGGGAAATCCCAGCAGCCCGTATTCAGCAGGAAGAAAG
GCCAAGGATATTATAAATGCAGCTCGGGAAAGCCTCGCGAAGATGATAGGGGGGAAACCTCAAGATATAA
TCTTCACTTCCGGGGGCACTGAGTCAAATAATTTAGTAATCCATTCTGTGGTGAAACATTTCCACGCAAA
CCAGACCTCAAAGGGACACACAGGTGGGCACCACAGCCCAGTGAAGGGGGCCAAGCCCCATTTCATTACT
TCCTCGGTGGAACACGACTCCATCCGGCTGCCCCTGGAGCACCTGGTGGAAGAACAAGTGGCAGCGGTCA
CCTTTGTCCCGGTGTCCAAGGTGAGCGGGCAGGCAGAGGTGGACGACATCCTCGCGGCAGTCCGCCCGAC
CACACGCCTCGTGACCATCATGCTGGCCAACAATGAGACTGGCATTGTCATGCCTGTCCCTGAAATCAGT
CAGCGCATTAAAGCCCTGAACCAGGAACGGGTGGCAGCTGGGCTACCTCCCATCCTCGTGCACACGGATG
CTGCACAGGCCTTGGGGAAGCAGCGCGTGGATGTGGAGGACCTGGGCGTGGACTTCCTTACAATCGTGGG
GCACAAGTTTTATGGTCCCAGGATTGGCGCACTTTATATACGAGGACTTGGTGAATTTACCCCTCTCTAC
CCTATGCTATTTGGAGGTGGACAAGAACGGAATTTCAGGCCAGGGACAGAGAACACCCCAATGATTGCTG
GCCTTGGGAAGGCCGCGGAGCTGGTGACCCAGAACTGCGAGGCTTATGAGGCCCACATGAGGGACGTCCG
CGACTACCTGGAAGAGAGGCTGGAAGCTGAATTCGGTCAGAAGAGAATCCATCTGAATAGCCAGTTTCCA
GGCACCCAGCGGCTTCCCAATACCTGTAACTTTTCCATCCGGGGACCCCGGCTTCAAGGCCACGTGGTGC
TTGCGCAGTGCCGAGTGCTGATGGCCAGTGTGGGGGCCGCGTGCCACTCGGACCACGGGGACCAGCCGTC
CCCAGTGCTGCTGAGCTACGGTGTCCCCTTCGACGTGGCCAGGAACGCGCTCCGGCTCAGCGTGGGCCGC
AGCACCACCAGGGCCGAGGTGGACCTCGTCGTGCAGGACCTGAAGCAGGCCGTGGCGCAGCTGGAGGACC
AGGCCTAG

Translation (445 aa):
MEAAVAPGRDAPAPAASQPSGCGKHNSPERKVYMDYNATTPLEPEVIQAMTKAMWEAWGNPSSPYSAGRK
AKDIINAARESLAKMIGGKPQDIIFTSGGTESNNLVIHSVVKHFHANQTSKGHTGGHHSPVKGAKPHFIT
SSVEHDSIRLPLEHLVEEQVAAVTFVPVSKVSGQAEVDDILAAVRPTTRLVTIMLANNETGIVMPVPEIS
QRIKALNQERVAAGLPPILVHTDAAQALGKQRVDVEDLGVDFLTIVGHKFYGPRIGALYIRGLGEFTPLY
PMLFGGGQERNFRPGTENTPMIAGLGKAAELVTQNCEAYEAHMRDVRDYLEERLEAEFGQKRIHLNSQFP
GTQRLPNTCNFSIRGPRLQGHVVLAQCRVLMASVGAACHSDHGDQPSPVLLSYGVPFDVARNALRLSVGR
STTRAEVDLVVQDLKQAVAQLEDQA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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