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Report for CCDS25257.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25257.1 Public Mus musculus 11 Epn3 23 108 98 CCDS HistoryNCBI Gene:71889Re-query CCDS DB by CCDS ID:25257.1Re-query CCDS DB by GeneID:71889See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25257.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000127305.1 ENSMUSP00000121390.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000127305.1Link to Ensembl Protein Viewer:ENSMUSP00000121390.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000127305Re-query CCDS DB by Protein ID:ENSMUSP00000121390
Original member Current member NCBI NM_027984.3 NP_082260.1 Accepted alive Link to Nucleotide Sequence:NM_027984.3Link to Protein Sequence:NP_082260.1Re-query CCDS DB by Nucleotide ID:NM_027984Re-query CCDS DB by Protein ID:NP_082260Link to BLAST:NP_082260.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082260.1 636 Q91W69 636 100% 0 0

Chromosomal Locations for CCDS 25257.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 94491151 94491479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94491571 94491804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94491909 94492025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94492166 94492435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94492862 94492949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94493773 94493904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94494093 94494173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94494934 94495052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94496002 94496542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1911 nt):
ATGACAACCTCTGCACTCCGCCGCCAGGTGAAGAACATTGTTCACAACTACTCTGAGGCCGAGATCAAGG
TG
CGTGAGGCCACCAGCAATGACCCCTGGGGCCCACCCAGTTCTCTCATGTCAGAGATTGCTGACCTGAC
C
TTCAACACGGTGGCCTTTGCTGAGGTTATGGGGATGGTGTGGCGGAGGCTCAATGACAGCGGTAAGAAC
TGG
CGACACGTATACAAGGCTCTGACACTATTGGACTACCTGCTCAAGACGGGCTCAGAACGTGTGGCCC
AC
CAGTGCCGCGAGAACCTCTACACTATCCAGACTCTCAAGGACTTCCAGTATATTGACCGAGATGGCAA
G
GATCAGGGCGTCAATGTTCGTGAGAAGGTCAAACAGGTGATGGCCCTTCTCAAGGATGAGGAGCGCCTG
CGG
CAAGAGCGAACCCATGCTCTCAAGACCAAAGAGCGAATGGCCCTGGAAGGCATGGGTATTGGCAGCG
GG
CAGCTGGGCTACAGCCGCAGATCTCGGGGCTCCCCCTCTTCTTACACGTCCGCATCTTCGTCCCCGCG
C
TATGCCTCAGACCTGGAGCAGGCGCGGCCTCAGACTTCTGGAGAAGAAGAGCTGCAGCTGCAGCTGGCC
TTG
GCCATGAGTCGCGAAGAGGCTGAAAGGCCAGTCCCCCCAGCCTCCCACAGGGATGAGGACCTGCAGC
TG
CAGCTGGCTCTGAGCCTGAGCCGGCAAGAGCATGAGAAGGGGGTGAGATCCTGGAAGGGAGATGACTC
T
CCAGTGGCCAACGGCGCAGAACCTGCTGGCCAACGTCGTCAACGGGACAGGGAGCCTGAGAGAGAAGAG
AGA
AAGGAGGAGGAGAAGCTGAAAACTAGTCAGTCCTCCATCCTGGACTTGGCTGACATCTTCGCACCTG
CC
CCGGCCCTGCCTTCCACACACTGCTCTGCTGACCCATGGGACATCCCAGGTCTCAGGCCGAACACAGA
G
CCAAGTGGCTCCTCTTGGGGACCTTCTGCAGACCCCTGGTCTCCAGTTCCCTCTGGAAATGCCCTGTCC
CGA
AGCCAGCCTTGGGATTTGCTTCCTACTCTTTCTTCCTCTGAGCCCTGGGGCAGGACCCCAGTGCTAC
CT
TCTGGACCCCCCATCGCAGACCCCTGGGCACCAAGCTCCCCTACCCGCAAACTCCCCAGCACTGGAGC
A
GACCCTTGGGGGGCCTCTATGGAGACCTCTGACACCTCTGCTCTAGGTGGTGCCTCGCCCTTCGACCCA
TTT
GCCAAACCTCTAGAATCCACAGAACCCAAGGAGAGCCGGGACAGTGCCCAGGCCCTGCCCACGGGGA
AG
TCCCCCAGCACTGTGGAGCTAGACCCATTTGGAGACTCCAGCCCCAGTTGCAAGCAGAATGGCATGAA
G
GAACCTGAAGCCCTTGACCTGGGTGTGCTAGGAGAGGCGCTACCGCAGCAGCCAGGAAAGGAAGCGCGC
CCC
TGCCGGACTCCGGAGTCCTTCCTGGGCCCCTCTGCCTCTTCTTTGGTCAACTTGGACTCACTAGTCA
AG
GCACCCCTGGCTGCAAGGACCCGGAATCCCTTCCTGACAGGTCTGGGTGTTCCGTCCCCAACCAACCC
G
TTTGGCGCGGGCGATCAGGGCAGGCCGACCCTAAACCAGATGCGTACCGGCTCCCCTGCTCTGGGCCTG
CCG
CCGGGGGGACCCGTCGGGGCGCCCGTGGGCTCTATGACCTACAGCGCCTCTCTGCCCCTTCCGCTCA
GC
AGCGTGCCGGTAGGCGCGACCCTCCCCGCCTCGGTCAGCGTCTTCCCGCAAGCGGGAGCCTTCGCCCC
G
CCGCCGGCGAGCTTGCCTCAGCCACTGCTGCCCACGTCCGGCCCAATGGGGCCGCTGCCCCCGCAGGCT
GGC
ACTAATCCCTTCCTCTGA


Translation (636 aa):
MTTSALRRQVKNIVHNYSEAEIKVREATSNDPWGPPSSLMSEIADLTFNTVAFAEVMGMVWRRLNDSGKN
W
RHVYKALTLLDYLLKTGSERVAHQCRENLYTIQTLKDFQYIDRDGKDQGVNVREKVKQVMALLKDEERL
R
QERTHALKTKERMALEGMGIGSGQLGYSRRSRGSPSSYT
SASSSPRYASDLEQARPQTSGEEELQLQLA
L
AMSREEAER
PVPPASHRDEDLQLQLALSLSRQEHEKGVRSWKGDDSPVANGAEPAGQRRQRDREPEREE
R
KEEEKLKTSQ
SSILDLADIFAPAPALPSTHCSADPWDIPGLRPNTEPSGSSWGPSADPWSPVPSGNALS
R
SQPWDLLPTLSSSEPWGRTPVLPSGPPIADPWAPSSPTRKLPSTGADPWGASMETSDTS
ALGGASPFDP
F
AKPLESTEPKESRDSAQALPTGKSPSTV
ELDPFGDSSPSCKQNGMKEPEALDLGVLGEALPQQPGKEAR
P
CRTPESFLGPSASSLVNLDSLVKAPLAARTRNPFLT
GLGVPSPTNPFGAGDQGRPTLNQMRTGSPALGL
P
PGGPVGAPVGSMTYSASLPLPLSSVPVGATLPASVSVFPQAGAFAPPPASLPQPLLPTSGPMGPLPPQA
G
TNPFL




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
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