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Report for CCDS25259.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25259.1 Public Mus musculus 11 Acsf2 23 108 98 CCDS HistoryNCBI Gene:264895Re-query CCDS DB by CCDS ID:25259.1Re-query CCDS DB by GeneID:264895See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25259.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103164.3 ENSMUSP00000099453.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103164.3Link to Ensembl Protein Viewer:ENSMUSP00000099453.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000103164Re-query CCDS DB by Protein ID:ENSMUSP00000099453
Original member Current member NCBI NM_153807.2 NP_722502.1 Accepted alive Link to Nucleotide Sequence:NM_153807.2Link to Protein Sequence:NP_722502.1Re-query CCDS DB by Nucleotide ID:NM_153807Re-query CCDS DB by Protein ID:NP_722502Link to BLAST:NP_722502.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_722502.1 615 Q8VCW8 615 100% 0 0

Chromosomal Locations for CCDS 25259.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 94558307 94558357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94558640 94558708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94558865 94558975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94559463 94559604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94561240 94561391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94562811 94562918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94569310 94569386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94569941 94570032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94570303 94570460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94570614 94570709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94571271 94571436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94571562 94571680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94572226 94572279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94572522 94572650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94573033 94573228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94601643 94601770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1848 nt):
ATGGCTGTCTATCACGGGATGCTGCGCTTCGGGAGGCTGTGTATCGCGAGCCTGGGGGCGCGGGGCCCCC
GGACGCTGCTCTCTCGCCCTCGGCCGAACTCGAAGTTGCAGAGTGTCCGCGCTCTCAGTTCTGGAATGGT
GAACTGCACCAACCCCTTGCCCATCGGAGGCCTCAGCTACATTCAGGGCCACACCGACTCCCATCTTGTG
AACACAACTGTGGGCGAGTGCCTTGACGCCACGGCGCAGAGGTTCCCCGACAGAGAGGCTTTGGTTATCC
TCCATGAAAACATCAGGCTGAACTTTGCGCAGCTCAAGGAGGAGGTGGACAAAGCTGCTTCTGGTCTTCT
GAGCATTGGCCTCCGCAAGGGTGACCGGCTGGGCATGTGGGGACCCAACTCCTATGCCTGGGTACTTATT
CAGCTGGCTACTGCCCAGGCAGGCATCATCCTGGTGTCTGTGAACCCAGCCTACCAGTCCTCAGAACTGG
AATATGTCCTCAGAAAGGTAGGCTGCAAAGGTATTGTGTTTCCCAAACAATTCAAGACCCAGCAGTACTA
CGACATCCTGAAGCAGGTCTGTCCTGAGCTGGAAAAGGCTCAGCCAGGGGCCTTGAAGAGTGAGAGACTC
CCAGACCTGACTACAGTCATCTCAGTGGATGCCCCTCTGCCGGGGACCCTGCTCCTGGATGATATTGTGG
CAGCCGGTGGCAAGGAACAGAACCTAGCCCAGCTGCGGTACAACCAGCGGTTCTTGTCCTGCTACGACCC
CATCAACATCCAGTTCACCTCGGGGACAACTGGAAACCCCAAGGGGGCCACTCTTTCCCACCACAACATC
GTAAACAACTCCATGCTGATAGGCCAGCGTCTGAAGATGCCCACAAAGACTGCAGAGGAGTTGCGCTTGG
TCCTGCCCAGTCCCCTGTACCACTGCCTGGGCTCCGTGGGGGGCACAATGGTGTCTATGATGCATGGTGC
CACTCTCCTCCTGTCTTCTCCAAGCTTCAATGGCAAGAAGGCATTGGAAGCCATCAGCAGAGAGAAAGGC
ACCCTCCTGTATGGCACACCCACGATGTTTGTGGATATTCTGAATCAGCCAGACTTCTCCAGTTATGATT
TCACAAGCATTCGTGGAGGTGTGATTGCTGGGTCCCCAGCACCCCCGGAATTGATTCGAGCCATCATCAA
CAAGATGAACATGAAGGAGCTGGTGGTTGTTTATGGAACCACAGAGAACAGTCCCGTGACCTTCATGAAC
TTTCCCGAGGACACCCTGGAGCAGAAGGCTGGTAGTGTGGGCAGAATTATGCCTCACACGGAGGCCCAGA
TTGTGAATGTGGAGACGGGTGAGCTGACCAACCTGAACGTGCCTGGGGAGCTGTATATCCGAGGGTACTG
CGTCATGCAGGGCTACTGGGGTGAGCCACAGAAGACCTTCGAGACGGTCGGACAAGACAAGTGGTATCGG
ACAGGAGACATTGCTTTGATGGATGAACAGGGCTTCTGCAAGATCGTCGGCCGATCGAAGGATATGATCA
TCCGTGGCGGTGAGAACATCTACCCTGCAGAGCTGGAGGACTTCTTCCTCAAGCACCCACAGGTGCAGGA
AGCGCAGGTGGTTGGGGTGAAGGACGAGCGGATGGGGGAGGAAATCTGTGCTTGCATTCGGCTGAAGAGC
GGAGAGACCACCACGGCGGAGGAGATCAAAGCTTTCTGCAAAGGGAAGATTTCCCACTTTAAGATTCCCC
GATACATCGTGTTTGTTGAAGGCTATCCTCTCACCATCTCAGGAAAGATCCAGAAATTCAAACTCCGAGA
GCAGATGGAACAGCATCTAAAACTGTGA

Translation (615 aa):
MAVYHGMLRFGRLCIASLGARGPRTLLSRPRPNSKLQSVRALSSGMVNCTNPLPIGGLSYIQGHTDSHLV
NTTVGECLDATAQRFPDREALVILHENIRLNFAQLKEEVDKAASGLLSIGLRKGDRLGMWGPNSYAWVLI
QLATAQAGIILVSVNPAYQSSELEYVLRKVGCKGIVFPKQFKTQQYYDILKQVCPELEKAQPGALKSERL
PDLTTVISVDAPLPGTLLLDDIVAAGGKEQNLAQLRYNQRFLSCYDPINIQFTSGTTGNPKGATLSHHNI
VNNSMLIGQRLKMPTKTAEELRLVLPSPLYHCLGSVGGTMVSMMHGATLLLSSPSFNGKKALEAISREKG
TLLYGTPTMFVDILNQPDFSSYDFTSIRGGVIAGSPAPPELIRAIINKMNMKELVVVYGTTENSPVTFMN
FPEDTLEQKAGSVGRIMPHTEAQIVNVETGELTNLNVPGELYIRGYCVMQGYWGEPQKTFETVGQDKWYR
TGDIALMDEQGFCKIVGRSKDMIIRGGENIYPAELEDFFLKHPQVQEAQVVGVKDERMGEEICACIRLKS
GETTTAEEIKAFCKGKISHFKIPRYIVFVEGYPLTISGKIQKFKLREQMEQHLKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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