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Report for CCDS25339.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25339.1 Public Mus musculus 11 Fbxl20 23 108 98 CCDS HistoryNCBI Gene:72194Re-query CCDS DB by CCDS ID:25339.1Re-query CCDS DB by GeneID:72194See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25339.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103143.9 ENSMUSP00000099432.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103143.9Link to Ensembl Protein Viewer:ENSMUSP00000099432.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000103143Re-query CCDS DB by Protein ID:ENSMUSP00000099432
Original member Current member NCBI NM_028149.1 NP_082425.1 Accepted alive Link to Nucleotide Sequence:NM_028149.1Link to Protein Sequence:NP_082425.1Re-query CCDS DB by Nucleotide ID:NM_028149Re-query CCDS DB by Protein ID:NP_082425Link to BLAST:NP_082425.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082425.1 436 Q9CZV8-1 436 100% 0 0

Chromosomal Locations for CCDS 25339.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 98089591 98089698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98090658 98090870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98092145 98092201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98093113 98093157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98095133 98095193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98096929 98097059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98098420 98098494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98099983 98100109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98101701 98101796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98109494 98109562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98110935 98111029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98113221 98113295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98115393 98115447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98128315 98128376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98149316 98149357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1311 nt):
ATGAGGAGGGACGTGAACGGAGTGACCAAGAGCAGGTTTGAGATGTTCTCAAACAGTGATGAGGCTGTAA
TCAATAAAAAACTTCCCAAAGAACTCCTGTTGAGGATATTTTCTTTCCTGGATGTTGTTACCCTGTGTCG
CTGTGCTCAGGTCTCCAGGGCCTGGAATGTCCTAGCTCTGGATGGCAGTAACTGGCAACGGATAGACCTG
TTTGATTTCCAGAGGGACATTGAGGGCCGGGTAGTGGAAAATATTTCAAAACGATGTGGAGGCTTTTTAC
GAAAGTTAAGTCTTCGTGGGTGTCTTGGAGTAGGAGACAATGCATTAAGGACCTTTGCACAAAACTGTAG
GAATATTGAAGTACTAAGTCTCAACGGATGTACAAAGACAACAGATGCTACCTGCACTAGCCTTAGCAAG
TTCTGCTCCAAACTCAGACACCTCGACTTGGCTTCCTGTACGTCAATAACAAACATGTCTCTAAAAGCTC
TGAGTGAGGGCTGTCCACTGTTGGAGCAGTTGAACATTTCCTGGTGTGACCAAGTAACCAAGGATGGCAT
TCAAGCACTAGTGAGAGGCTGTGGGGGTCTCAAGGCCTTATTCTTAAAAGGCTGCACTCAGCTAGAAGAT
GAAGCTCTCAAGTACATAGGTGCACACTGCCCTGAGCTAGTGACTTTAAACCTGCAAACTTGCTTACAAA
TCACAGATGAAGGTCTCATTACCATATGCAGAGGGTGTCATAAGTTGCAGTCCCTCTGTGCCTCTGGGTG
CTCCAATATCACAGATGCCATCCTGAACGCTCTAGGTCAGAACTGCCCTCGACTTAGAATATTAGAAGTG
GCCAGATGTTCCCAGTTAACAGATGTGGGCTTCACTACCCTAGCCAGGAATTGCCATGAGCTTGAGAAGA
TGGACCTAGAAGAATGTGTGCAGATCACGGATAGCACATTAATCCAGCTTTCCATTCACTGTCCTCGGCT
TCAAGTGTTGAGTCTTTCTCACTGTGAGCTGATCACAGACGATGGAATCCGTCACCTAGGGAACGGGGCC
TGTGCCCATGACCAGCTGGAGGTGATAGAGCTGGACAACTGCCCACTAATCACCGATGCATCCCTGGAGC
ACTTGAAGAGCTGTCACAGCCTTGAGCGAATAGAACTCTATGACTGCCAGCAGATCACCCGGGCTGGCAT
CAAGAGACTCAGGACCCATTTACCCAACATTAAAGTCCACGCCTACTTCGCCCCTGTCACTCCGCCCCCA
TCAGTCGGGGGCAGCAGACAGCGCTTCTGCAGGTGCTGCATCATCCTATGA

Translation (436 aa):
MRRDVNGVTKSRFEMFSNSDEAVINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRIDL
FDFQRDIEGRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIEVLSLNGCTKTTDATCTSLSK
FCSKLRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLED
EALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEV
ARCSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRHLGNGA
CAHDQLEVIELDNCPLITDASLEHLKSCHSLERIELYDCQQITRAGIKRLRTHLPNIKVHAYFAPVTPPP
SVGGSRQRFCRCCIIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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