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Report for CCDS25363.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25363.1 Public Mus musculus 11 Nr1d1 23 108 98 CCDS HistoryNCBI Gene:217166Re-query CCDS DB by CCDS ID:25363.1Re-query CCDS DB by GeneID:217166See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25363.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064941.6 ENSMUSP00000069505.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064941.6Link to Ensembl Protein Viewer:ENSMUSP00000069505.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000064941Re-query CCDS DB by Protein ID:ENSMUSP00000069505
Original member Current member NCBI NM_145434.4 NP_663409.2 Accepted alive Link to Nucleotide Sequence:NM_145434.4Link to Protein Sequence:NP_663409.2Re-query CCDS DB by Nucleotide ID:NM_145434Re-query CCDS DB by Protein ID:NP_663409Link to BLAST:NP_663409.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663409.2 615 Q3UV55 615 100% 0 0

Chromosomal Locations for CCDS 25363.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 98768220 98768419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98769049 98769259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98769703 98769888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98770188 98770831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98771200 98771344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98771437 98771525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98771793 98772134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98774718 98774748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1848 nt):
ATGACGACCCTGGACTCCAATAACAACACAGGTGGTGTTATCACCTACATTGGCTCTAGTGGCTCCTCCC
CGAGCCGGACCAGCCCGGAGTCCCTCTACAGTGACAGCTCCAATGGCAGCTTCCAGTCCCTGACTCAAGG
TTGTCCCACATACTTCCCACCATCACCTACTGGCTCCCTCACCCAGGACCCTGCCCGCTCTTTTGGCAGT
GCGCCACCCAGTCTCAGTGATGATAGCTCCCCTTCTTCTGCATCATCGTCATCCTCTTCATCCTCCTCCT
CCTTCTATAACGGGAGCCCCCCAGGAAGTCTACAAGTGGCCATGGAAGACAGCAGCCGAGTGTCCCCCAG
CAAGGGCACAAGCAACATTACCAAGCTGAATGGCATGGTGCTACTGTGTAAGGTGTGTGGGGACGTGGCC
TCAGGCTTCCACTATGGAGTGCACGCCTGTGAGGGCTGCAAGGGCTTTTTTCGCCGGAGCATCCAACAGA
ATATCCAGTACAAACGGTGTCTGAAAAACGAAAACTGCTCCATCGTTCGCATCAATCGCAACCGCTGCCA
GCAGTGTCGCTTCAAGAAGTGTCTCTCCGTTGGCATGTCTAGAGATGCTGTGCGTTTTGGGCGCATCCCC
AAGAGAGAGAAGCAACGGATGCTTGCCGAGATGCAGAGCGCCATGAACTTGGCCAACAACCAACTGAGCA
GCCTGTGCCCTCTAGAGACCTCACCTACTCCACATCCCACCTCTGGCTCCATGGGCCCCTCACCTCCTCC
TGCACCAGCCCCCACACCTTTGGTGGGCTTCTCTCAGTTCCCACAACAGCTGACACCACCCAGGTCTCCC
AGCCCTGAGCCCACCATGGAGGATGTGATATCCCAGGTCGCCCGGGCCCATCGAGAAATCTTCACCTATG
CCCATGACAAGTTAGGCACCTCACCTGGTAACTTCAATGCCAATCATGCATCAGGTAGCCCTTCAGCTAC
AACTCCACACCGCTGGGAGAGTCAGGGATGCCCGTCTGCCCCCAACGACAACAACCTTTTGGCGGCTCAG
CGTCATAATGAAGCGCTGAATGGTCTACGCCAGGGCCCTTCCTCCTACCCGCCTACCTGGCCTTCTGGCC
CCACCCACCACAGCTGCCACCAACCTAACAGCAATGGGCACCGTCTGTGCCCCACCCACGTATATTCGGC
CCCAGAAGGGGAGGCACCTGCCAACAGTCTACGGCAAGGCAACACCAAGAATGTTCTGCTGGCATGTCCC
ATGAACATGTATCCCCATGGACGCAGCGGCCGGACTGTGCAGGAGATCTGGGAAGACTTCTCTATGAGCT
TCACGCCTGCCGTTCGGGAGGTGGTAGAGTTTGCCAAACACATCCCAGGCTTCCGTGACCTTTCTCAGCA
CGACCAGGTGACCCTGCTTAAGGCTGGCACCTTTGAGGTGCTGATGGTGCGCTTTGCATCGTTGTTCAAC
GTGAAGGACCAGACAGTGATGTTCCTGAGCCGCACAACCTACAGTCTGCAGGAGCTCGGTGCCATGGGCA
TGGGCGACCTGCTCAATGCCATGTTTGACTTCAGCGAGAAGCTCAACTCCCTGGCACTTACCGAGGAGGA
GCTGGGCCTATTCACCGCGGTGGTGCTTGTCTCTGCAGACCGCTCGGGAATGGAGAATTCCGCTTCGGTG
GAGCAGCTCCAGGAGACGCTGCTGCGGGCTCTTCGGGCTCTGGTGCTGAAGAACCGGCCCTCGGAGACTT
CCCGCTTCACCAAGCTGCTGCTCAAGCTGCCGGACCTGCGGACCCTGAACAACATGCATTCCGAGAAGCT
GCTGTCCTTCCGGGTGGACGCCCAGTGA

Translation (615 aa):
MTTLDSNNNTGGVITYIGSSGSSPSRTSPESLYSDSSNGSFQSLTQGCPTYFPPSPTGSLTQDPARSFGS
APPSLSDDSSPSSASSSSSSSSSSFYNGSPPGSLQVAMEDSSRVSPSKGTSNITKLNGMVLLCKVCGDVA
SGFHYGVHACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIP
KREKQRMLAEMQSAMNLANNQLSSLCPLETSPTPHPTSGSMGPSPPPAPAPTPLVGFSQFPQQLTPPRSP
SPEPTMEDVISQVARAHREIFTYAHDKLGTSPGNFNANHASGSPSATTPHRWESQGCPSAPNDNNLLAAQ
RHNEALNGLRQGPSSYPPTWPSGPTHHSCHQPNSNGHRLCPTHVYSAPEGEAPANSLRQGNTKNVLLACP
MNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFN
VKDQTVMFLSRTTYSLQELGAMGMGDLLNAMFDFSEKLNSLALTEEELGLFTAVVLVSADRSGMENSASV
EQLQETLLRALRALVLKNRPSETSRFTKLLLKLPDLRTLNNMHSEKLLSFRVDAQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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