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Report for CCDS25439.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
25439.1 |
Public |
Mus musculus |
11 |
Stat5a |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:20850](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:25439.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:20850](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 11 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 25439.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000004145.13 |
ENSMUSP00000004145.7 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000004145.13](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000004145.7](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000004145](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000004145](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000107356.7 |
ENSMUSP00000102979.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000107356.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000102979.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000107356](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000102979](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001362680.1 |
NP_001349609.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001362680.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001349609.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001362680](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001349609](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001349609.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_011488.3 |
NP_035618.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_011488.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_035618.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_011488](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_035618](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_035618.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 25439.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2382 nt): ATGGCGGGCTGGATTCAGGCCCAGCAGCTTCAGGGAGATGCCCTGCGCCAGATGCAAGTGTTGTATGGGC AGCATTTCCCCATCGAGGTCCGGCACTACCTGGCCCAGTGGATCGAGAGCCAGCCGTGGGATGCTATTGA CTTGGATAATCCCCAGGACCGAGGTCAGGCCACCCAACTCCTGGAGGGCCTGGTGCAGGAGCTGCAGAAG AAGGCGGAGCACCAGGTGGGGGAAGATGGGTTTTTGCTGAAGATCAAGCTGGGGCACTATGCCACACAGC TCCAGAACACGTATGACCGCTGTCCCATGGAGCTGGTTCGCTGTATCCGTCACATTCTGTACAACGAACA GAGGCTGGTTCGCGAAGCCAACAATTGCAGCTCCCCTGCTGGTGTCCTGGTTGACGCCATGTCCCAGAAG CACCTTCAGATCAACCAAAGGTTTGAGGAGCTGCGCCTGATCACACAGGACACGGAGAACGAGCTGAAGA AGCTGCAGCAGACCCAAGAGTACTTCATCATCCAGTACCAGGAGAGCCTGCGGATCCAAGCTCAGTTTGC CCAGCTGGGCCAGCTGAACCCCCAGGAGCGCATGAGCAGGGAGACGGCCCTCCAGCAGAAGCAAGTGTCC CTGGAGACCTGGCTGCAGCGAGAGGCACAGACACTGCAGCAGTACCGAGTGGAGCTGGCTGAGAAGCACC AGAAGACCCTGCAGCTGCTGCGGAAGCAGCAGACCATCATCCTGGACGACGAGCTGATCCAGTGGAAGCG GAGACAGCAGCTGGCCGGGAACGGGGGTCCCCCCGAGGGCAGCCTGGACGTGCTGCAGTCCTGGTGTGAG AAGCTGGCCGAGATCATCTGGCAGAACCGGCAGCAGATCCGCAGGGCTGAGCACCTGTGCCAGCAGCTGC CCATCCCAGGCCCCGTGGAGGAGATGCTGGCTGAGGTCAACGCCACCATCACGGACATCATCTCAGCTCT GGTCACCAGCACGTTCATCATCGAGAAGCAGCCTCCTCAGGTCCTGAAGACCCAGACCAAGTTTGCGGCC ACCGTGCGCCTGCTGGTGGGGGGAAAGCTGAATGTGCACATGAACCCCCCGCAGGTGAAGGCGACCATCA TCAGCGAGCAGCAGGCCAAGTCCCTGCTCAAGAATGAGAACACCCGCAATGAGTGCAGCGGCGAGATCCT GAACAACTGTTGCGTCATGGAGTACCACCAGGCCACTGGCACGCTCAGCGCCCACTTCAGAAACATGTCA CTGAAAAGAATCAAGCGCGCCGACAGGCGTGGTGCAGAGTCGGTGACGGAGGAGAAGTTCACAGTCCTGT TTGAGTCTCAGTTCAGCGTTGGCAGCAACGAGCTGGTGTTCCAGGTGAAGACCCTGTCCCTCCCTGTGGT CGTTATCGTCCATGGCAGCCAGGACCACAATGCTACTGCCACCGTGCTGTGGGACAATGCCTTTGCTGAG CCGGGCAGGGTGCCATTTGCTGTGCCTGACAAGGTGCTGTGGCCGCAGCTGTGTGAAGCGCTCAACATGA AATTCAAGGCTGAAGTACAGAGCAACCGGGGCTTGACCAAAGAGAACCTCGTGTTCCTGGCACAGAAACT GTTCAACATCAGCAGCAACCACCTCGAGGACTACAACAGCATGTCTGTGTCCTGGTCCCAGTTCAACCGG GAGAACTTGCCCGGCTGGAACTACACCTTCTGGCAGTGGTTCGACGGGGTGATGGAGGTGCTGAAGAAGC ACCATAAGCCCCATTGGAATGATGGGGCTATCCTGGGTTTCGTGAACAAGCAACAGGCCCACGACCTGCT CATCAACAAGCCGGACGGGACCTTCCTGCTGCGCTTCAGTGACTCGGAAATCGGGGGCATCACCATTGCT TGGAAGTTTGACTCTCCGGACCGAAACCTCTGGAATCTGAAGCCATTCACGACGCGAGATTTCTCCATTC GGTCCCTGGCCGACCGGCTGGGGGACCTGAACTACCTTATCTACGTGTTCCCAGACCGACCCAAGGACGA GGTCTTTGCCAAGTATTACACTCCTGTACTTGCGAAAGCAGTTGACGGATACGTGAAGCCACAGATCAAG CAAGTGGTCCCTGAGTTCGTCAATGCATCCACAGATGCCGGAGCCAGCGCCACCTACATGGACCAGGCTC CTTCCCCAGTCGTGTGCCCTCAACCTCACTACAACATGTACCCACCCAACCCTGACCCTGTCCTTGACCA AGATGGCGAGTTTGACCTGGATGAGAGCATGGATGTTGCCAGGCACGTGGAAGAACTTTTACGCCGGCCC ATGGACAGTCTCGACGCCCGCCTCTCCCCACCTGCTGGTCTCTTCACCTCCGCTAGAAGCTCCCTGTCCT GA
Translation (793 aa): MAGWIQAQQLQGDALRQMQVLYGQHFPIEVRHYLAQWIESQPWDAIDLDNPQDRGQATQLLEGLVQELQK KAEHQVGEDGFLLKIKLGHYATQLQNTYDRCPMELVRCIRHILYNEQRLVREANNCSSPAGVLVDAMSQK HLQINQRFEELRLITQDTENELKKLQQTQEYFIIQYQESLRIQAQFAQLGQLNPQERMSRETALQQKQVS LETWLQREAQTLQQYRVELAEKHQKTLQLLRKQQTIILDDELIQWKRRQQLAGNGGPPEGSLDVLQSWCE KLAEIIWQNRQQIRRAEHLCQQLPIPGPVEEMLAEVNATITDIISALVTSTFIIEKQPPQVLKTQTKFAA TVRLLVGGKLNVHMNPPQVKATIISEQQAKSLLKNENTRNECSGEILNNCCVMEYHQATGTLSAHFRNMS LKRIKRADRRGAESVTEEKFTVLFESQFSVGSNELVFQVKTLSLPVVVIVHGSQDHNATATVLWDNAFAE PGRVPFAVPDKVLWPQLCEALNMKFKAEVQSNRGLTKENLVFLAQKLFNISSNHLEDYNSMSVSWSQFNR ENLPGWNYTFWQWFDGVMEVLKKHHKPHWNDGAILGFVNKQQAHDLLINKPDGTFLLRFSDSEIGGITIA WKFDSPDRNLWNLKPFTTRDFSIRSLADRLGDLNYLIYVFPDRPKDEVFAKYYTPVLAKAVDGYVKPQIK QVVPEFVNASTDAGASATYMDQAPSPVVCPQPHYNMYPPNPDPVLDQDGEFDLDESMDVARHVEELLRRP MDSLDARLSPPAGLFTSARSSLS
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