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Report for CCDS25442.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25442.1 Public Mus musculus 11 Cavin1 23 108 98 CCDS HistoryNCBI Gene:19285Re-query CCDS DB by CCDS ID:25442.1Re-query CCDS DB by GeneID:19285See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25442.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060792.5 ENSMUSP00000058321.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060792.5Link to Ensembl Protein Viewer:ENSMUSP00000058321.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000060792Re-query CCDS DB by Protein ID:ENSMUSP00000058321
Original member Current member NCBI NM_008986.2 NP_033012.1 Accepted alive Link to Nucleotide Sequence:NM_008986.2Link to Protein Sequence:NP_033012.1Re-query CCDS DB by Nucleotide ID:NM_008986Re-query CCDS DB by Protein ID:NP_033012Link to BLAST:NP_033012.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033012.1 392 O54724 392 100% 0 0

Chromosomal Locations for CCDS 25442.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 100958624 100959325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100969990 100970466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1179 nt):
ATGGAGGATGTCACGCTCCATATCGTTGAGCGGCCGTATTCCGGATTTCCCGATGCTTCCTCAGAGGGCC
CGGAGCCCACCCAAGGGGAGGCGCGGGCCACGGAGGAGCCGTCGGGGACCGGCTCCGACGAGCTGATCAA
GTCGGACCAGGTGAACGGTGTGCTGGTGCTGAGCCTTCTGGATAAAATCATCGGCGCCGTTGACCAGATC
CAGCTGACCCAAGCCCAGCTGGAGGAGCGACAGGCGGAGATGGAGGGCGCTGTGCAGAGCATCCAGGGAG
AGCTGAGCAAGCTGGGCAAGGCGCACGCCACCACGAGCAACACCGTGAGCAAGTTGCTGGAGAAGGTGCG
CAAGGTCAGCGTCAACGTGAAGACCGTGCGCGGCAGCCTGGAGCGCCAGGCCGGCCAGATAAAGAAACTG
GAGGTCAACGAGGCGGAGCTGCTGAGGCGCCGCAACTTCAAAGTCATGATCTACCAGGATGAAGTCAAGC
TGCCGGCCAAACTGAGCGTCAGCAAGTCGCTGAAAGAGTCGGAGGCACTGCCTGAGAAGGAGGGTGACGA
GCTGGGCGAGGGCGAGCGGCCCGAGGATGACACCGCGGCGATCGAGCTGTCGTCCGACGAGGCGGTGGAG
GTGGAGGAGGTGATCGAGGAGTCCCGCGCCGAGCGCATCAAGCGCAGCGGCCTGCGGCGCGTGGACGACT
TCAAGAAGGCCTTCTCCAAGGAGAAGATGGAGAAGACCAAGGTGCGCACGCGTGAGAACCTGGAGAAGAC
GCGCCTGAAGACCAAGGAGAACCTGGAGAAGACACGGCACACGCTGGAGAAGCGCATGAACAAGCTGGGC
ACGCGCCTGGTGCCCGTGGAGCGACGAGAGAAGCTGAAGACATCCCGGGACAAGCTGCGCAAGTCCTTCA
CGCCCGACCATGTGGTGTATGCGCGCTCCAAGACCGCTGTCTACAAGGTGCCGCCTTTCACCTTCCACGT
CAAGAAGATCCGCGAGGGCGAGGTGGAGGTGCTGAAGGCCACCGAGATGGTGGAGGTGGGTCCCGAGGAC
GACGAGGTTGGCGCGGAGCGCGGCGAGGCCACTGACCTGCTGCGCGGGAGCAGCCCCGACGTGCACACGC
TGCTGGAGATCACCGAGGAGTCGGACGCCGTCCTGGTGGACAAGAGCGACAGCGACTGA

Translation (392 aa):
MEDVTLHIVERPYSGFPDASSEGPEPTQGEARATEEPSGTGSDELIKSDQVNGVLVLSLLDKIIGAVDQI
QLTQAQLEERQAEMEGAVQSIQGELSKLGKAHATTSNTVSKLLEKVRKVSVNVKTVRGSLERQAGQIKKL
EVNEAELLRRRNFKVMIYQDEVKLPAKLSVSKSLKESEALPEKEGDELGEGERPEDDTAAIELSSDEAVE
VEEVIEESRAERIKRSGLRRVDDFKKAFSKEKMEKTKVRTRENLEKTRLKTKENLEKTRHTLEKRMNKLG
TRLVPVERREKLKTSRDKLRKSFTPDHVVYARSKTAVYKVPPFTFHVKKIREGEVEVLKATEMVEVGPED
DEVGAERGEATDLLRGSSPDVHTLLEITEESDAVLVDKSDSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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