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Report for CCDS25447.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25447.1 Public Mus musculus 11 Mlx 23 108 98 CCDS HistoryNCBI Gene:21428Re-query CCDS DB by CCDS ID:25447.1Re-query CCDS DB by GeneID:21428See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25447.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000017945.14 ENSMUSP00000017945.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000017945.14Link to Ensembl Protein Viewer:ENSMUSP00000017945.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000017945Re-query CCDS DB by Protein ID:ENSMUSP00000017945
Original member Current member NCBI NM_011550.3 NP_035680.3 Accepted alive Link to Nucleotide Sequence:NM_011550.3Link to Protein Sequence:NP_035680.3Re-query CCDS DB by Nucleotide ID:NM_011550Re-query CCDS DB by Protein ID:NP_035680Link to BLAST:NP_035680.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035680.3 298 O08609-1 298 99.6644% 0 1

Chromosomal Locations for CCDS 25447.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 101087326 101087529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101087754 101087790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101088236 101088325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101088598 101088704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101088933 101089032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101089219 101089318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101089668 101089869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101091109 101091165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (897 nt):
ATGACGGAGCCGGGCGCCTCTCCGGAGGACCCTTGGGTCAAGGCAAGCTTCGCGGACGCGCACGCCGGCG
AGGGGAGGGCGGGTCGGGCTCGTGCACGTAGGGGGTCCGGAAGACGCGGGGCTCCCCAACTATCCCCAGA
GTCTCCCCTGCTGTCCGGGGCCCGGGGCTGCAGAGAAGACAGCTCTCACCCGGCCTGTGCCAAGGTCGAG
TATGCCTACAGTGACAACAGCCTGGATCCTGGGCTTTTTGTAGAAAGCACCCACAAGGGGAGTGTAGTGT
CCAGAGCTAATAGCATCGGCTCCACCAGTGCCTCTTCTGTCCCCAACACAGATGATGAGGACAGTGATTA
TCAGCAGGAGTCCTACAAGGAGTCCTACAAAGACCGGAGGCGGCGTGCGCACACTCAGGCTGAACAGAAG
AGAAGGGATGCTATTAAGAGAGGCTATGATGACCTTCAGACCATTGTCCCTACCTGCCAGCAGCAGGATT
TCTCCATTGGCTCCCAAAAACTCAGCAAAGCCATCGTTCTACAGAAGACCATTGACTACATCCAGTTTTT
ACACAAGGAGAAGAAAAAGCAGGAGGAAGAAGTATCCACACTGCGCAAGGACGTCACAGCCTTGAAGATA
ATGAAAGTGAACTATGAGCAAATCGTGAAGGCACATCAGGACAACCCTCATGAGGGAGAGGACCAGGTCT
CTGACCAGGTCAAGTTCAACGTCTTTCAAGGCATCATGGACTCCCTCTTCCAGTCTTTCAACGCCTCTAT
CTCTGTGGCCAGCTTCCAGGAGCTCTCAGCTTGTGTCTTCAGCTGGATTGAGGAACACTGTGAGCCACAG
ACTCTACGAGAGATTGTGATCGGTGTCCTTCATCAGTTGAAAAACCAACTCTACTGA

Translation (298 aa):
MTEPGASPEDPWVKASFADAHAGEGRAGRARARRGSGRRGAPQLSPESPLLSGARGCREDSSHPACAKVE
YAYSDNSLDPGLFVESTHKGSVVSRANSIGSTSASSVPNTDDEDSDYQQESYKESYKDRRRRAHTQAEQK
RRDAIKRGYDDLQTIVPTCQQQDFSIGSQKLSKAIVLQKTIDYIQFLHKEKKKQEEEVSTLRKDVTALKI
MKVNYEQIVKAHQDNPHEGEDQVSDQVKFNVFQGIMDSLFQSFNASISVASFQELSACVFSWIEEHCEPQ
TLREIVIGVLHQLKNQLY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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