NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25546.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25546.1 Public Mus musculus 11 Dcaf7 23 108 98 CCDS HistoryNCBI Gene:71833Re-query CCDS DB by CCDS ID:25546.1Re-query CCDS DB by GeneID:71833See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25546.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058438.8 ENSMUSP00000058168.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058438.8Link to Ensembl Protein Viewer:ENSMUSP00000058168.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000058438Re-query CCDS DB by Protein ID:ENSMUSP00000058168
Original member Current member NCBI NM_027946.3 NP_082222.1 Accepted alive Link to Nucleotide Sequence:NM_027946.3Link to Protein Sequence:NP_082222.1Re-query CCDS DB by Nucleotide ID:NM_027946Re-query CCDS DB by Protein ID:NP_082222Link to BLAST:NP_082222.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082222.1 342 P61963 342 100% 0 0

Chromosomal Locations for CCDS 25546.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 106037124 106037261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106046691 106046849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106047637 106047748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106048143 106048261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106051757 106051966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106053731 106053848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106054683 106054855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1029 nt):
ATGTCCCTGCACGGCAAACGGAAGGAGATCTACAAATATGAAGCGCCCTGGACTGTGTACGCCATGAACT
GGAGCGTGCGGCCGGACAAGCGCTTTCGCCTGGCGCTGGGCAGCTTCGTGGAAGAGTACAACAACAAGGT
TCAGCTTGTTGGTTTAGATGAGGAGAGTTCAGAGTTTATTTGCCGAAACACCTTTGACCACCCGTACCCT
ACCACAAAGCTCATGTGGATTCCTGACACAAAGGGCGTCTATCCAGACCTCCTGGCAACAAGTGGTGACT
ATCTCCGTGTGTGGAGGGTTGGTGAAACAGAGACCAGGCTGGAGTGCTTGCTAAACAACAACAAGAACTC
AGACTTCTGTGCTCCCCTGACCTCCTTTGACTGGAACGAGGTGGATCCTTATCTTCTAGGTACCTCAAGC
ATTGACACAACGTGCACCATCTGGGGACTAGAGACCGGGCAAGTGCTGGGACGAGTGAATCTCGTGTCTG
GCCATGTGAAGACCCAGCTAATTGCCCATGACAAAGAGGTCTATGACATCGCCTTCAGCCGCGCTGGAGG
GGGCAGGGACATGTTTGCCTCTGTGGGCGCTGATGGGTCTGTGAGAATGTTTGACCTCCGCCATCTGGAA
CATAGCACCATCATTTATGAAGACCCACAGCACCACCCCCTGCTTCGCCTCTGCTGGAACAAGCAGGACC
CTAACTACCTGGCCACCATGGCCATGGACGGGATGGAGGTGGTGATTCTGGATGTTCGAGTTCCCTGCAC
ACCGGTTGCTAGGCTAAACAACCACCGAGCATGTGTCAATGGCATTGCCTGGGCCCCACACTCGTCCTGC
CACATCTGTACTGCAGCGGATGACCATCAGGCCCTCATCTGGGACATCCAGCAGATGCCTCGGGCCATCG
AGGACCCTATCTTGGCCTACACAGCTGAGGGAGAGATCAACAATGTGCAGTGGGCCTCCACTCAGCCTGA
CTGGATCGCTATCTGCTACAACAACTGCCTGGAGATACTCCGCGTGTAG

Translation (342 aa):
MSLHGKRKEIYKYEAPWTVYAMNWSVRPDKRFRLALGSFVEEYNNKVQLVGLDEESSEFICRNTFDHPYP
TTKLMWIPDTKGVYPDLLATSGDYLRVWRVGETETRLECLLNNNKNSDFCAPLTSFDWNEVDPYLLGTSS
IDTTCTIWGLETGQVLGRVNLVSGHVKTQLIAHDKEVYDIAFSRAGGGRDMFASVGADGSVRMFDLRHLE
HSTIIYEDPQHHPLLRLCWNKQDPNYLATMAMDGMEVVILDVRVPCTPVARLNNHRACVNGIAWAPHSSC
HICTAADDHQALIWDIQQMPRAIEDPILAYTAEGEINNVQWASTQPDWIAICYNNCLEILRV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH