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Report for CCDS25587.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25587.1 Public Mus musculus 11 Abca8b 23 108 98 CCDS HistoryNCBI Gene:27404Re-query CCDS DB by CCDS ID:25587.1Re-query CCDS DB by GeneID:27404See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25587.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020948.14 ENSMUSP00000020948.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020948.14Link to Ensembl Protein Viewer:ENSMUSP00000020948.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000020948Re-query CCDS DB by Protein ID:ENSMUSP00000020948
Original member NCBI NM_013851.3 NP_038879.2 Updated not alive Link to Nucleotide Sequence:NM_013851.3Link to Protein Sequence:NP_038879.2Re-query CCDS DB by Nucleotide ID:NM_013851Re-query CCDS DB by Protein ID:NP_038879
Current member NCBI NM_013851.4 NP_038879.2 Accepted alive Link to Nucleotide Sequence:NM_013851.4Link to Protein Sequence:NP_038879.2Re-query CCDS DB by Nucleotide ID:NM_013851Re-query CCDS DB by Protein ID:NP_038879Link to BLAST:NP_038879.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038879.2 1620 Q8K440-1 1620 100% 0 0

Chromosomal Locations for CCDS 25587.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 109934510 109934611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109934723 109934778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109935716 109935795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109936342 109936482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109936697 109936816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109937707 109937801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109937893 109937968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109938439 109938599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109940812 109940903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109941546 109941663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109942237 109942357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109945767 109945858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109946245 109946307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109947065 109947184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109949772 109949885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109950034 109950207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109950629 109950736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109952553 109952690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109953498 109953631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109955035 109955201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109957063 109957258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109961794 109961913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109962581 109962720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109964941 109965031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109966681 109966819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109967029 109967148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109967590 109967765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109969062 109969172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109969818 109969876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109971685 109971853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109973671 109973818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109974508 109974693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109974990 109975131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109976437 109976663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109977770 109977873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109979862 109980023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109980850 109981054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109981678 109981773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4863 nt):
ATGATCAAGAGAGAGATAAGTGTGCGCCAACAAACTTGTGCTTTATTACAGAAGAACCTTCTTAAGAAAT
GGAGACTGAAAAGGGAGTCCTTGATGGAGTGGGTGAGCTCCTTGCTCCTTCTGCTTTTCTTGTATTGGTA
TCCCCATGGTCATGGAGCTACTGACCTGTCTTCAGTGCCCACCAAGGATCTGGGACGAGTCGATTCTTTC
AGACAATCTGGGTTCATGATAGGGTACACGCCTGTCACCAGCATGACACAACAGATAATGGAGAAGGTAG
CTGCAACCCCTTTCATGGCAGATAAAAAAGTCTTGGGACTGTTGGATGAAGAAAATATCAAGGAATTAAC
AGAAAGTCATGCAGAAATAATAAGAGTCATTTTTTCTGACACATTCTCATACCATCTGAAATTCCAGTTT
GATCAGAGAATCCCAACGTCGAGGGAACTCAGAGACCATAATGCTCATTGTGATGGACTGTATGAAGATG
TCAACTGTCTGATAGCCATATTCTGGAAGGAAGGATTTGTGGCTCTTCAAGCTGCCATCAATGCTGCCAT
CATAGAAACCACAACAAACCATTCAGTGATGGAGGAACTGCTATCAGTGTCAGGGAAATTCATGAAGATC
CATCCTTTTGTCCGTCAAGAAGGAATTCTGACTGATTTCTTTATTTTCACCTGCATCATTTCCTTCTCCC
CAATCACCTATTATGTGTCAATCAATGTTGCAAGAGAGAGGAAAAGGATGAAGGGCTTGATGATGATGAT
GGGCCTTCGAGATCCAGCATTCTGGCTATCTTGGGGTCTGCTCTATGCTGGCTTTGTCTTCATTATGGCT
CTATCCCTGGCACTTGTTATCAAATCTGTCCAGTTTTTTATTCTAACCAGCTTCATGGTGGTCTTTAGCC
TCTTCCTCCTTTATGGATTATCTATGATCACTTTGGCTTTCCTAATGAGTGCCTTGGTGAGGAAGTCTGT
CCTCACTGGCCTGTCTGTGTTTCTTCTCACCATCTTCTGGGGAAGTCTAGGCTTCACATCCCTGTACAGA
TACCTCCCTGCACCTGTGGAATGGACTCTCAGTCTCTTTAGCCCCTTTGCCTTCACACTAGGAATGGCCC
AGCTCTTACGTGTGGATTATGATTTAAATTCTAATGCACCCCCTGATCCAGCCAGTGGCTCAAATCTGAT
TATAGCAACCAATTTCATGCTGGTATTTGATGCGTTTTTGTATCTGGCCCTGATGATGTACTTCGAAAAA
GTTCTGCCAAATGAATACGGACATCAGCACTCTCCCCTGTTTTTCCTGAAATCTTCATTTTGGCTACAAA
CACGAAAGCCTGCTCATGTGATTCTTGAAGATGGAATAGACCCCGTTCCTTCATCAGGTGACTCGTTTGA
ACCGGTGTCCCCAGAATTCCACGGGAAAGAATCCATCAGAATCAGAAATATTTCAAAAGAATACAAAGGA
AAGCCCAATAAAATAGAAGCCTTAAAAGACCTGACGTTGGACATATATGAAGGCCAAATCACAGCAGTAC
TTGGTCACAGTGGAGCTGGGAAATCAACACTGTTAAATATTCTTAGCGGATTATCTGTTCCTACTAAAGG
TTCTGTCACCATCTATAATAATAACTTATCAGAAATGGCTGACCTTGAAAACATCTTGAGGATTGCTGGA
GTTTGTCCACAAGCCAATGTTCAATTTGACTTCCTTACTGTGAGAGAAAACCTCAGGCTTTTTGCTAAAA
TAAGAGGAATTCCACCCCAAGATGTGGAGAAAGAGGTGCAAAGGGTTTTGCTAGAATTGGAAATGAAAAA
TATCCAAAATATCCTTGCTCAAAACCTAAGTGGGGGACAGAAGAGAAAGCTGACTTTTGGAATCGCCATT
TTAGGAGATTCTCAGATTTTCCTACTGGATGAGCCCACCGCTGGCCTGGATCCCTTTTCAAGGCACCGGG
TGTGGAATCTCCTGAAGGAGCGCAGAGCAGACCGTGTGGTCCTCTTCAGCACGCAGTTCATGGATGAGGC
TGACATCCTGGCTGATAGGAAAGTGTTCATCTCCAATGGGAGGCTGAAGTGTGCAGGATCATCGCTCTTT
CTGAAGAAGAAATGGGGAGTTGGGTATCACTTAAGTTTGCAGCTGAAAGAAGTCTGTGTTCCAGAAAACA
TCACATCGCTTGTTAAACAGCACATCCCTGCAGCCAAGCTATCAGCTGAAGGGGAAGGAAAGCTTCTCTA
TACATTACCCTTAGAAACAACTTATAGATTTCCAGAGCTTTGCCAGAGTCTTGACAGCTGTCCTGGACTG
GGAATTGAAAACTATGGTGTTTCCATGACAACTTTGAATGAGGTGTTCCTGAAGCTAGAAGGAAAAGCAT
CAATTGATGAACCAGAGGTTGACATCGTGGGAGAAGGACAAACAGAGAGATCTGGGGACACAGAAAGGCT
TATGGAGATGGAGCAAACTCTCTCTTCACTTAGGGAAACAGAGAAGACAGACGGCATGGCACTCTGGAGG
CAGCAAACCTGTGCGATCGCAAAGGTTCGCCTGTTGAAGTTAAAGCACGAAAGGAAAACACTTTTATCTG
TGCTCTTGATACTGGTAGTCGGCATCTGTCCTTTTCTTTTTGAAAATATCTCAACGAAAATACGTCAAAG
CTCTTACACTTGGGAACTTTCCCCACACGATTACTTCCTTGCTCCGGGACAACAGCCCCAGGGCATGCTC
ACTCAGTTATTGATCATTAATAAGACAGAGGCAAGCATTGACGACTTTATCCATTCTGTGGAACGCCAGA
ACATAGCTTTGGAAGTCGATGCTTCTGGAACCAGAGATGGTACAGATGACCCATCCTACAATGGAGCCCT
TATAGTGTCTGGCAATGAGAAGAACCACAGCTTTTCGTTTGCATGCAACACCAAGAGACTGAACTGCTTC
CCAGTTCTGATGGACATCCTGAGCAACGGGCTACTTGGAATGGTTAAACCGTCAGCCCGCATCCAAACCG
ACAGAAGCACATATCTCATGGATGAAACTATTCATCCTTTAGAAGACCTATGGAAGACTGCATTCTGGCT
GATTCTGACCTCCGCTTGCCCTCCTTATATTGCCATGAGCAGTGTCACAGATTATAAGAACAGAGCTTGG
TTCCAGCTGCGGGTCTCCGGCCTCTTCCCTTCGGCTTACTGGGTCGGGCAGGCAATGGTGGACATTCCCC
TGTACTGCTTTGTCTTCCTCTTCATGTCGTTAATGGACTACCTTTTTCGCTTCCCAGATACCATGTTTTC
TATTATAAGCCACGTCATACAAATCCCGTGTTCTGTTGGCTATGCCATATCCCTGATCTTCTTAACATAC
GTGATTTCGTTCATTTCTCGCAAGGGGAAAAAAAACAGCGGCATTTGGTCACTTAGCTTCTATATCATCA
CTGTGTTCTCAGTGGCTGTAATATTGCTGGCTTTTGATGTGGATGGTACACAGTACTACATCATCTTTTT
GATACCACCGTCCACTCTGGTTGGATGCTTGATCTTGTCTTTGCATCTTTTCATAGGTCAAATCTTTGAA
GAAGGACAAGTTATAGAGCCATTCCTGGTATTCCTCATTCCTTTCCTTCATGTTTTCATTTTTATTTTTA
CCCTTCGATGTCTGGAATGGAAGTTTGGAAAGAAAACAATGAGGAAAGATCCCATCTTTAGAATTTCTCC
AAGAAACAATGATGTGTATCAAAACCCAGAAGAGCCAGAAGATGAGGATGAAGATGTTCAAATGGAGAGA
ATGAGAACAGCGAATGCCTTGGTATCCACCAGTTTTGATGAGAAGCCAGTCATCATTGCCAGCTGCCTAC
GCAAAGAATATGCAGGGAAGCAGAAGCATTGCCTTTCCAAGAAGAAGGCCAAGATAGCCACTAGGAATGT
CTCGTTTTGTGTCAGGAAAGGTGAGATTCTAGGATTGTTGGGACACAATGGAGCTGGCAAAAGTACATCT
CTTAAAATGATAAGTGGAGACACAAAAGTCACAGCTGGGCAGGTGTTACTGAAAGGGAGCAGAGAAGGGG
ACACCCCGGGGTTCCTGGGGTACTGTCCTCAGGAGAATGCTCTGTGGCCCAACCTCACTGTGAAGGAGCA
CCTGGAGATATTTGCTGCAGTGAGGGGCTTGCGCAAAAGTCACGCTGCAGTCGCCATCACAAGGTTGGCA
GATGCGCTCAAGCTGCAGGACCAGCTGAAGTCTCCTGTGAAGACGCTGTCAGAGGGAGTGAAGAGAAAGC
TGTGCTTCGTGCTGAGCATCCTGGGGAACCCATCTATATTGCTTCTAGATGAGCCGTCCACTGGGCTGGA
TCCTGAGGGGCAGCAGCAAATATGGCAAGCAATCAGGGCCATCATAAAAAATACAGACAGGGGTGCCCTG
CTGACCACCCATTACATGGCAGAGGCTGAGGCTCTGTGTGACCGAGTGGCCATCCTGGTGTCTGGAAGGC
TGAGGTGTATTGGATCCATCCAACATCTCAAAAGCAAATTTGGCAAAGATTACCTGCTGGAGATGAAGGT
GAAGACCCTCGAGCAGGTGGAGCCCCTCAATACGGAGATCCTCAGGCTTTTTCCCCAGGCTTCTAGGCAG
GAACGGTACTCTTCTCTGATGGCTTACAAATTACCAGTGGAAGCTGTACAGCCTTTATCCCAAGCTTTCT
TCAAGTTAGAGAAAGTTAAGCAGACCTTTGACCTGGAGGAGTACAGCCTCTCTCAGTCTACCCTGGAGCA
GGTCTTCCTAGAGCTCTCCAAGGAGCAGGAGCTGGATGGCCTTGAATTAGAAGAATTAGACTCCTCCATA
AAGTGGAAGCTCCTCCCACAGGAAGAGGCTTAA

Translation (1620 aa):
MIKREISVRQQTCALLQKNLLKKWRLKRESLMEWVSSLLLLLFLYWYPHGHGATDLSSVPTKDLGRVDSF
RQSGFMIGYTPVTSMTQQIMEKVAATPFMADKKVLGLLDEENIKELTESHAEIIRVIFSDTFSYHLKFQF
DQRIPTSRELRDHNAHCDGLYEDVNCLIAIFWKEGFVALQAAINAAIIETTTNHSVMEELLSVSGKFMKI
HPFVRQEGILTDFFIFTCIISFSPITYYVSINVARERKRMKGLMMMMGLRDPAFWLSWGLLYAGFVFIMA
LSLALVIKSVQFFILTSFMVVFSLFLLYGLSMITLAFLMSALVRKSVLTGLSVFLLTIFWGSLGFTSLYR
YLPAPVEWTLSLFSPFAFTLGMAQLLRVDYDLNSNAPPDPASGSNLIIATNFMLVFDAFLYLALMMYFEK
VLPNEYGHQHSPLFFLKSSFWLQTRKPAHVILEDGIDPVPSSGDSFEPVSPEFHGKESIRIRNISKEYKG
KPNKIEALKDLTLDIYEGQITAVLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNNLSEMADLENILRIAG
VCPQANVQFDFLTVRENLRLFAKIRGIPPQDVEKEVQRVLLELEMKNIQNILAQNLSGGQKRKLTFGIAI
LGDSQIFLLDEPTAGLDPFSRHRVWNLLKERRADRVVLFSTQFMDEADILADRKVFISNGRLKCAGSSLF
LKKKWGVGYHLSLQLKEVCVPENITSLVKQHIPAAKLSAEGEGKLLYTLPLETTYRFPELCQSLDSCPGL
GIENYGVSMTTLNEVFLKLEGKASIDEPEVDIVGEGQTERSGDTERLMEMEQTLSSLRETEKTDGMALWR
QQTCAIAKVRLLKLKHERKTLLSVLLILVVGICPFLFENISTKIRQSSYTWELSPHDYFLAPGQQPQGML
TQLLIINKTEASIDDFIHSVERQNIALEVDASGTRDGTDDPSYNGALIVSGNEKNHSFSFACNTKRLNCF
PVLMDILSNGLLGMVKPSARIQTDRSTYLMDETIHPLEDLWKTAFWLILTSACPPYIAMSSVTDYKNRAW
FQLRVSGLFPSAYWVGQAMVDIPLYCFVFLFMSLMDYLFRFPDTMFSIISHVIQIPCSVGYAISLIFLTY
VISFISRKGKKNSGIWSLSFYIITVFSVAVILLAFDVDGTQYYIIFLIPPSTLVGCLILSLHLFIGQIFE
EGQVIEPFLVFLIPFLHVFIFIFTLRCLEWKFGKKTMRKDPIFRISPRNNDVYQNPEEPEDEDEDVQMER
MRTANALVSTSFDEKPVIIASCLRKEYAGKQKHCLSKKKAKIATRNVSFCVRKGEILGLLGHNGAGKSTS
LKMISGDTKVTAGQVLLKGSREGDTPGFLGYCPQENALWPNLTVKEHLEIFAAVRGLRKSHAAVAITRLA
DALKLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGLDPEGQQQIWQAIRAIIKNTDRGAL
LTTHYMAEAEALCDRVAILVSGRLRCIGSIQHLKSKFGKDYLLEMKVKTLEQVEPLNTEILRLFPQASRQ
ERYSSLMAYKLPVEAVQPLSQAFFKLEKVKQTFDLEEYSLSQSTLEQVFLELSKEQELDGLELEELDSSI
KWKLLPQEEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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