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Report for CCDS25593.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25593.1 Public Mus musculus 11 Kcnj16 23 108 98 CCDS HistoryNCBI Gene:16517Re-query CCDS DB by CCDS ID:25593.1Re-query CCDS DB by GeneID:16517See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25593.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106635.1 ENSMUSP00000102246.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106635.1Link to Ensembl Protein Viewer:ENSMUSP00000102246.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106635Re-query CCDS DB by Protein ID:ENSMUSP00000102246
Original member Current member EBI ENSMUST00000106636.7 ENSMUSP00000102247.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106636.7Link to Ensembl Protein Viewer:ENSMUSP00000102247.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106636Re-query CCDS DB by Protein ID:ENSMUSP00000102247
Original member Current member EBI ENSMUST00000180023.7 ENSMUSP00000136382.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000180023.7Link to Ensembl Protein Viewer:ENSMUSP00000136382.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000180023Re-query CCDS DB by Protein ID:ENSMUSP00000136382
Original member Current member EBI ENSMUST00000178798.1 ENSMUSP00000137414.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178798.1Link to Ensembl Protein Viewer:ENSMUSP00000137414.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178798Re-query CCDS DB by Protein ID:ENSMUSP00000137414
Original member Current member NCBI NM_001252207.1 NP_001239136.1 Accepted alive Link to Nucleotide Sequence:NM_001252207.1Link to Protein Sequence:NP_001239136.1Re-query CCDS DB by Nucleotide ID:NM_001252207Re-query CCDS DB by Protein ID:NP_001239136Link to BLAST:NP_001239136.1
Original member Current member NCBI NM_001252208.1 NP_001239137.1 Accepted alive Link to Nucleotide Sequence:NM_001252208.1Link to Protein Sequence:NP_001239137.1Re-query CCDS DB by Nucleotide ID:NM_001252208Re-query CCDS DB by Protein ID:NP_001239137Link to BLAST:NP_001239137.1
Original member Current member NCBI NM_001252209.2 NP_001239138.1 Accepted alive Link to Nucleotide Sequence:NM_001252209.2Link to Protein Sequence:NP_001239138.1Re-query CCDS DB by Nucleotide ID:NM_001252209Re-query CCDS DB by Protein ID:NP_001239138Link to BLAST:NP_001239138.1
Original member Current member NCBI NM_001252210.2 NP_001239139.1 Accepted alive Link to Nucleotide Sequence:NM_001252210.2Link to Protein Sequence:NP_001239139.1Re-query CCDS DB by Nucleotide ID:NM_001252210Re-query CCDS DB by Protein ID:NP_001239139Link to BLAST:NP_001239139.1
Original member Current member NCBI NM_010604.3 NP_034734.3 Accepted alive Link to Nucleotide Sequence:NM_010604.3Link to Protein Sequence:NP_034734.3Re-query CCDS DB by Nucleotide ID:NM_010604Re-query CCDS DB by Protein ID:NP_034734Link to BLAST:NP_034734.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239136.1 419 Q9Z307 419 100% 0 0
NP_001239137.1 419 Q9Z307 419 100% 0 0
NP_001239138.1 419 Q9Z307 419 100% 0 0
NP_001239139.1 419 Q9Z307 419 100% 0 0
NP_034734.3 419 Q9Z307 419 100% 0 0

Chromosomal Locations for CCDS 25593.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 111024514 111025773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1260 nt):
ATGAGCTATTACGGAAGTAGCTACAGGATCGTCAATGTGGACTCCAAATATCCAGGCTATCCTCCAGAGC
ATGCCATCGCTGAGAAGAGAAGAGCAAGAAGGCGCTTGCTCCACAAAGATGGCAGCTGTAATGTGTACTT
TAAACACATTTTTGGAGAATGGGGGAGCTACATGGTTGATATTTTTACCACTCTTGTGGATACCAAGTGG
CGCCATATGTTCGTAATATTTTCTCTGTCTTACATTCTCTCCTGGTTGATATTTGGCTCCATATTTTGGC
TCATAGCCTTTCATCACGGAGACCTATTAAGCGATCCAGATATCACCCCTTGTGTTGACAACGTGCATTC
ATTTACGGCTGCATTTTTATTCTCCCTGGAGACCCAGACCACCATTGGATACGGTTACCGCTGTGTCACC
GAAGAGTGCTCTGTGGCTGTACTGACAGTGATCCTTCAGTCCATCCTCAGCTGCATCATAAACACCTTCA
TCATTGGAGCAGCCTTGGCAAAGATGGCAACTGCCCGGAAGAGAGCCCAGACCATACGCTTCAGCTATTT
TGCCCTCATTGGTATGAGAGACGGGAAGCTTTGCCTCATGTGGCGCATAGGTGACTTCCGACCAAACCAT
GTGGTAGAGGGCACGGTGAGAGCCCAACTTCTGCGCTATTCAGAAGACAGTGAAGGGAGGATGACGATGG
CGTTTAAAGACCTCAAACTCGTCAATGACCAGATAATCCTGGTAACTCCAGTGACTATTGTCCATGAAAT
TGACCATGAGAGCCCTCTGTATGCCCTTGACCGCAAGGCAGTGGCCAAAGATAATTTCGAGATTCTGGTG
ACATTTATTTATACTGGTGATTCCACTGGGACATCCCACCAGTCCAGAAGTTCCTACATCCCCAGAGAAA
TTCTCTGGGGCCACAGGTTTCATGATGTATTGGAAGTGAAGAGAAAGTACTACAAGGTGAACTGCTTGCA
GTTTGAAGGAAGCGTGGAAGTCTACGCCCCCTTTTGCAGTGCCAAACAACTGGACTGGAAGGACCAACAA
CTCAACAACTTGGAGAAAACGTCCCCTGCCCGAGGATCCTGCAATTCTGACACCAACACCAGGAGGCGGT
CCTTCAGCGCAGTTGCCGTGGTGAGCAGCTGTGAGAACCCAGAGGAGACCGTCCTGTCCCCACAAGATGA
ATGTAAGGAGATGCCCTATCAGAAAGCCCTCCTGACTTTAAATAGGATCTCCATGGAATCCCAGATGTAG

Translation (419 aa):
MSYYGSSYRIVNVDSKYPGYPPEHAIAEKRRARRRLLHKDGSCNVYFKHIFGEWGSYMVDIFTTLVDTKW
RHMFVIFSLSYILSWLIFGSIFWLIAFHHGDLLSDPDITPCVDNVHSFTAAFLFSLETQTTIGYGYRCVT
EECSVAVLTVILQSILSCIINTFIIGAALAKMATARKRAQTIRFSYFALIGMRDGKLCLMWRIGDFRPNH
VVEGTVRAQLLRYSEDSEGRMTMAFKDLKLVNDQIILVTPVTIVHEIDHESPLYALDRKAVAKDNFEILV
TFIYTGDSTGTSHQSRSSYIPREILWGHRFHDVLEVKRKYYKVNCLQFEGSVEVYAPFCSAKQLDWKDQQ
LNNLEKTSPARGSCNSDTNTRRRSFSAVAVVSSCENPEETVLSPQDECKEMPYQKALLTLNRISMESQM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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