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Report for CCDS25624.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25624.1 Public Mus musculus 11 Grin2c 23 108 98 CCDS HistoryNCBI Gene:14813Re-query CCDS DB by CCDS ID:25624.1Re-query CCDS DB by GeneID:14813See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25624.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003351.12 ENSMUSP00000003351.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003351.12Link to Ensembl Protein Viewer:ENSMUSP00000003351.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000003351Re-query CCDS DB by Protein ID:ENSMUSP00000003351
Original member Current member EBI ENSMUST00000106554.1 ENSMUSP00000102164.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106554.1Link to Ensembl Protein Viewer:ENSMUSP00000102164.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106554Re-query CCDS DB by Protein ID:ENSMUSP00000102164
Original member Current member NCBI NM_010350.2 NP_034480.2 Accepted alive Link to Nucleotide Sequence:NM_010350.2Link to Protein Sequence:NP_034480.2Re-query CCDS DB by Nucleotide ID:NM_010350Re-query CCDS DB by Protein ID:NP_034480Link to BLAST:NP_034480.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034480.2 1239 Q01098 1239 100% 0 0

Chromosomal Locations for CCDS 25624.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 115249571 115250707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115251009 115251241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115252583 115252770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115253208 115253368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115253698 115253927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115254053 115254178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115255273 115255426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115255686 115255851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115256043 115256254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115257337 115257451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115257773 115258371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115260734 115261132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3720 nt):
ATGGGTGGAGCCCTGGGGCCCGCCCTGCTTCTCACTTCACTCCTTGGTGCTTGGGCAGGGCTGGGCGCAG
GGCAGGGAGAACAGGCCGTGACCGTGGCGGTGGTGTTTGGCAGCTCTGGGCCACTGCAGGCCCAGGCCCG
GACTCGTCTCACCCCGCAGAACTTCCTGGACTTGCCTCTGGAGATCCAGCCACTCACCATCGGGGTCAAC
AATACCAACCCCAGCAGCATCCTCACCCAAATCTGTGGGCTCCTGGGTGCCGCCCGAGTCCACGGCATCG
TCTTTGAGGACAACGTGGACACTGAGGCCGTGGCTCAGCTGCTGGATTTCGTCTCCTCTCAGACCCACGT
GCCCATCCTCAGCATCAGTGGAGGTTCTGCTGTGGTCCTCACCCCCAAGGAGCCAGGCTCCGCCTTTCTA
CAGCTGGGCGTGTCCCTGGAGCAGCAGCTGCAGGTGCTGTTCAAGGTGCTGGAGGAATACGACTGGAGCG
CGTTCGCTGTCATCACCAGCCTGCACCCGGGCCACGCGCTCTTCCTCGAGGGCGTGCGCGCCGTCGCCGA
CGCCAGCTACCTGAGCTGGCGGCTGCTGGACGTGCTCACGCTGGAGCTGGGCCCCGGTGGGCCGCGAGCG
CGCACTCAGCGCTTACTGCGCCAGGTCGACGCCCCGGTGCTGGTGGCCTACTGCTCCCGTGAAGAGGCGG
AGGTGCTCTTCGCGGAGGCTGCACAGGCTGGCTTGGTGGGACCCGGTCACGTGTGGTTAGTACCTAATCT
GGCGCTGGGAAGCACCGACGCTCCCCCTGCAGCCTTCCCAGTGGGCCTCATCAGTGTGGTCACCGAGAGT
TGGCGCCTTAGCCTACGCCAGAAAGTCCGCGACGGTGTAGCCATTCTGGCCCTCGGTGCCCACAGCTACC
GACGCCAGTACGGTACCCTTCCAGCCCCGGCTGGAGACTGCCGAAGCCACCCAGGACCCGTCAGCCCTGC
CAGGGAGGCTTTCTACAGGCATCTGCTGAATGTCACCTGGGAAGGCCGAGACTTCTCTTTTAGCCCTGGT
GGGTACCTGGTCCAGCCCACAATGGTTGTGATCGCTCTCAACCGGCATCGCCTCTGGGAGATGGTGGGAC
GGTGGGATCATGGGGTCCTGTACATGAAGTATCCAGTATGGCCTCGCTACAGCACTTCTCTGCAGCCTGT
GGTGGACAGCCGGCACCTGACAGTGGCCACACTGGAAGAAAGGCCTTTTGTCATTGTGGAGAGCCCTGAC
CCTGGCACAGGTGGCTGTGTTCCCAACACTGTGCCCTGCCGTAGACAGAGCAACCACACCTTCAGCAGCG
GGGATATAACCCCCTACACCAAGCTCTGTTGTAAGGGCTTCTGCATCGACATCCTCAAGAAGCTGGCCAA
GGTGGTCAAGTTCTCCTACGACTTGTACCTGGTGACCAACGGCAAGCACGGCAAGAGGGTTCGTGGTGTG
TGGAATGGTATGATCGGTGAGGTATACTACAAGCGGGCAGACATGGCCATCGGCTCCCTCACCATCAATG
AAGAGCGCTCAGAGATTATAGACTTCTCTGTGCCTTTTGTGGAGACCGGCATCAGTGTGATGGTGGCAAG
GAGCAACGGCACCGTCTCCCCCTCGGCTTTTCTGGAGCCCTACAGCCCTGCCGTGTGGGTGATGATGTTT
GTAATGTGCCTCACGGTGGTTGCCATCACTGTCTTCATGTTCGAGTATTTCAGCCCTGTCAGCTACAACC
AGAATCTCACCAAGGGCAAGAAGTCAGGTGGACCATCCTTCACCATTGGCAAGTCCGTGTGGTTGCTGTG
GGCACTGGTCTTCAACAACTCTGTTCCCATCGAGAACCCCCGGGGCACCACCAGCAAGATCATGGTCCTG
GTGTGGGCCTTCTTCGCTGTCATCTTCCTCGCTAGCTACACGGCCAATCTGGCAGCCTTCATGATCCAGG
AACAATACATCGACACTGTGTCGGGCCTTAGTGACAAGAAGTTTCAGCGGCCTCAAGACCAATACCCACC
CTTCCGTTTTGGCACGGTACCTAATGGCAGCACAGAGAGGAACATTCGTAGCAACTATCGTGACATGCAC
ACTCACATGGTCAAGTTCAACCAGCGCTCGGTGGAGGATGCTCTCACAAGCCTGAAGATGGGGAAGCTGG
ACGCCTTCATCTATGATGCCGCCGTCCTCAACTACATGGCGGGCAAGGACGAAGGCTGCAAGCTGGTCAC
CATTGGGTCTGGCAAAGTCTTTGCCACCACTGGCTATGGCATTGCCATGCAGAAAGACTCCCACTGGAAG
CGGGCCATAGACCTGGCGCTCCTGCAGTTCCTGGGGGATGGGGAGACACAGAAGTTGGAGACAGTGTGGC
TCTCAGGGATCTGCCATAACGAGAAGAACGAGGTGATGAGCAGCAAGCTGGACATTGACAACATGGCGGG
CGTCTTCTACATGCTGTTGGTGGCCATGGGGCTGGCCCTTCTGGTCTTTGCCTGGGAGCACCTGGTCTAC
TGGAAACTTCGACACTCAGTGCCCAGCTCATCCCAGCTGGACTTCCTGCTGGCTTTCAGCAGGGGCATCT
ACAGCTGCTTCAACGGGGTACAGAGCCTTCCGAGCCCTGCGCGGCCGCCCAGCCCGGACCTTACAGCAGG
CTCAGCCCAGGCCAATGTGCTGAAGATGCTGCAGGCGGCTCGAGACATGGTGAGCACAGCGGACGTGAGC
GGCTCTTTGGACCGCGCCACTCGTACCATCGAGAACTGGGGCAACAATCGCCGCGCGCCTGCTCCCACCA
CCTCCGGCCCGCGGTCATGCACCCCGGGTCCTCCGGGACAACCGAGTCCCAGCGGCTGGCGGCCTCCCGG
TGGGGGCCGCACCCCGCTAGCGCGCCGGGCCCCGCAGCCTCCCGCTCGCCCCGCGACCTGCGCAGGGTCG
CCTCAGCCCGACGTGTCCCGAGCATCCTGCAGGCACGCTTGGGATGCGCGGTGGCCAGTGCGAGTCGGGC
ATCAGGGATCGCACCTCTCGGCCTCCGAGCGGCGCGCGCTCCCGGAGCGCTCCCTGTTGCACGCGCACTG
CCACTACAGTTCCTTCCCTCGAGCAGAGAGGTCAGGGCGCCCATTTCTCCCGCTATTCCCGGAGCCCCCG
GAGCCCGACGACCTGCCGCTGCTCGGGCCGGAACAGCTGGCTCGGCGGGAGGCTCTGCTGCGCGCGGCCT
GGGCCAGGGGCCCGCGCCCTCGGCACGCTTCCCTGCCCAGCTCCGTGGCAGAAGCCTTCACTCGATCCAA
CCCTCTGCCTGCCAGGTGTACCGGTCACGCCTGCGCTTGCCCATGTCCCCAAAGCCGGCCATCCTGCCGG
CACGTGGCTCAAACACAGTCGTTGCGGCTGCCATCCTACCGGGAGGCCTGTGTGGAGGGCGTGCCAGCAG
GGGTGGCCGCCACCTGGCAGCCCAGACAGCATGTCTGCCTGCACACCCATACCCACCTGCCGTTCTGCTG
GGGGACTGTCTGCCGTCACCCTCCACCCTGTTCCAGCCACAGTCCCTGGCTCATTGGAACTTGGGAGCCT
CCATCACACAGAGGCAGGACCCTGGGGCTAGGTACAGGCTACAGGGACAGTGGGGTGCTAGAAGAGGTCA
GCAGGGAAGCTTGTGGGACACAAGGGTTTCCAAGGTCCTGCACCTGGAGGCGGATCTCCAGCCTGGAATC
AGAAGTGTGA

Translation (1239 aa):
MGGALGPALLLTSLLGAWAGLGAGQGEQAVTVAVVFGSSGPLQAQARTRLTPQNFLDLPLEIQPLTIGVN
NTNPSSILTQICGLLGAARVHGIVFEDNVDTEAVAQLLDFVSSQTHVPILSISGGSAVVLTPKEPGSAFL
QLGVSLEQQLQVLFKVLEEYDWSAFAVITSLHPGHALFLEGVRAVADASYLSWRLLDVLTLELGPGGPRA
RTQRLLRQVDAPVLVAYCSREEAEVLFAEAAQAGLVGPGHVWLVPNLALGSTDAPPAAFPVGLISVVTES
WRLSLRQKVRDGVAILALGAHSYRRQYGTLPAPAGDCRSHPGPVSPAREAFYRHLLNVTWEGRDFSFSPG
GYLVQPTMVVIALNRHRLWEMVGRWDHGVLYMKYPVWPRYSTSLQPVVDSRHLTVATLEERPFVIVESPD
PGTGGCVPNTVPCRRQSNHTFSSGDITPYTKLCCKGFCIDILKKLAKVVKFSYDLYLVTNGKHGKRVRGV
WNGMIGEVYYKRADMAIGSLTINEERSEIIDFSVPFVETGISVMVARSNGTVSPSAFLEPYSPAVWVMMF
VMCLTVVAITVFMFEYFSPVSYNQNLTKGKKSGGPSFTIGKSVWLLWALVFNNSVPIENPRGTTSKIMVL
VWAFFAVIFLASYTANLAAFMIQEQYIDTVSGLSDKKFQRPQDQYPPFRFGTVPNGSTERNIRSNYRDMH
THMVKFNQRSVEDALTSLKMGKLDAFIYDAAVLNYMAGKDEGCKLVTIGSGKVFATTGYGIAMQKDSHWK
RAIDLALLQFLGDGETQKLETVWLSGICHNEKNEVMSSKLDIDNMAGVFYMLLVAMGLALLVFAWEHLVY
WKLRHSVPSSSQLDFLLAFSRGIYSCFNGVQSLPSPARPPSPDLTAGSAQANVLKMLQAARDMVSTADVS
GSLDRATRTIENWGNNRRAPAPTTSGPRSCTPGPPGQPSPSGWRPPGGGRTPLARRAPQPPARPATCAGS
PQPDVSRASCRHAWDARWPVRVGHQGSHLSASERRALPERSLLHAHCHYSSFPRAERSGRPFLPLFPEPP
EPDDLPLLGPEQLARREALLRAAWARGPRPRHASLPSSVAEAFTRSNPLPARCTGHACACPCPQSRPSCR
HVAQTQSLRLPSYREACVEGVPAGVAATWQPRQHVCLHTHTHLPFCWGTVCRHPPPCSSHSPWLIGTWEP
PSHRGRTLGLGTGYRDSGVLEEVSREACGTQGFPRSCTWRRISSLESEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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