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Report for CCDS25679.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25679.2 Public Mus musculus 11 Mettl23 23 108 98 CCDS HistoryNCBI Gene:74319Re-query CCDS DB by CCDS ID:25679.2Re-query CCDS DB by GeneID:74319See the combined annotation on chromosome 11 in Sequence Viewer

Public Note for CCDS 25679.2
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript data, and by conservation in rat and opossum.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 25679.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106370.9 ENSMUSP00000101978.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106370.9Link to Ensembl Protein Viewer:ENSMUSP00000101978.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000106370Re-query CCDS DB by Protein ID:ENSMUSP00000101978
Original member Current member NCBI NM_028865.3 NP_083141.3 Accepted alive Link to Nucleotide Sequence:NM_028865.3Link to Protein Sequence:NP_083141.3Re-query CCDS DB by Nucleotide ID:NM_028865Re-query CCDS DB by Protein ID:NP_083141Link to BLAST:NP_083141.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083141.3 253 A2AA28 253 100% 0 0

Chromosomal Locations for CCDS 25679.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 116843607 116843774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116848254 116848358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116848901 116849138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116849216 116849300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116849390 116849555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (762 nt):
ATGGACAGTGTCCGGCCCCGCGCTCCTTGGGCACCGCCTCCTGACCCGGCGTCCCTGGACTCCCCTACGT
GCGAGCCCGGCCTCATGGCCGGGACCCAGCTCTTTCGGTTCCGGGAGGAGCCAGTTCCCGGAGGCAATCG
GGCGGTGCTGGAGGTCCGCGTCCCGCAGGTCCTGCATGTCCAGTATGGAATGTATGTTTGGCCCTGTGCT
GTAGTCCTGGCCCAATACCTGTGGTTTCACAGAAGATCTCTACCAGGCAAAGCTGTCTTAGAGGTTGGCG
CTGGAGTGAGCCTTCCTGGGATTTTGGCTGCCAAATGTGGTGCTAAAGTAATACTATCTGACAGCTCAGA
GTTTCCTCACTGTCTGGATATCTGCAGGCAAAGTTGCCAGATGAATAACCTGCCACAGGTCGAAGTTGTA
GGACTGACATGGGGCCACATATCAAAGGACATTCTGTCTTTGCCACCACAAGACATCATTCTTGGATCTG
ATGTGTTCTTTGAACCAGAAGACTTTGAAAGCATTTTAGCCACAGTATACTTCCTGATGCAGAAGAATCC
AAAAGTTCAATTTTGGTCTACATACCAGGTCCGAAGTGCTGACTGGTCACTTGAAGGCTTGCTCTACAAG
TGGGATATGAAATGTGTGCATATTCCTCTGGAGTCTTTTGATGCCGACAAGGAAGACATAGCAGAGTCTA
CCCTTCCAGGAAGACATACTGTTGAAATGCTGATCATCTCCTTTGCAAAGGACAGTTTCTGA

Translation (253 aa):
MDSVRPRAPWAPPPDPASLDSPTCEPGLMAGTQLFRFREEPVPGGNRAVLEVRVPQVLHVQYGMYVWPCA
VVLAQYLWFHRRSLPGKAVLEVGAGVSLPGILAAKCGAKVILSDSSEFPHCLDICRQSCQMNNLPQVEVV
GLTWGHISKDILSLPPQDIILGSDVFFEPEDFESILATVYFLMQKNPKVQFWSTYQVRSADWSLEGLLYK
WDMKCVHIPLESFDADKEDIAESTLPGRHTVEMLIISFAKDSF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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