NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25698.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25698.1 Public Mus musculus 11 Pgs1 23 108 98 CCDS HistoryNCBI Gene:74451Re-query CCDS DB by CCDS ID:25698.1Re-query CCDS DB by GeneID:74451See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25698.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000132676.7 ENSMUSP00000121973.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000132676.7Link to Ensembl Protein Viewer:ENSMUSP00000121973.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000132676Re-query CCDS DB by Protein ID:ENSMUSP00000121973
Original member Current member NCBI NM_133757.2 NP_598518.1 Accepted alive Link to Nucleotide Sequence:NM_133757.2Link to Protein Sequence:NP_598518.1Re-query CCDS DB by Nucleotide ID:NM_133757Re-query CCDS DB by Protein ID:NP_598518Link to BLAST:NP_598518.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598518.1 553 Q8BHF7 553 100% 0 0

Chromosomal Locations for CCDS 25698.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 117986880 117987013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117997441 117997630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118000199 118000276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118001616 118001715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118002351 118002540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118003341 118003519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118005370 118005891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118014574 118014722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118019607 118019726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1662 nt):
ATGGCGGCGCCGGCAGCGGGCCCGGTGTTCTGGAGGCGGCTGCTGGGCCTGCTGCCTGGCAGGCCCGGGC
TGGCCGCGCTCCTGGGCCGCCTCTCCGACCGTCTGGGCAGGAGCCGGGAGCGCCGGCGCCGGAGGTCACC
ATGGCTGTTATTGGCTCCCTTGCTGTCCCCAACCGTTCCTCAGGTCACCTCCCCACCTTGCTGCCTATGT
CCCGAGGGTGTACACAGGTTCCAGTGGATCAGAAACCTGGTTCCAGAGTTTGGAGTCTCCAGCTCTCATG
TCAGGGTACTGTCTTCCCCTGCAGAGTTCTTCGAGCTCATGAAGGGGCAGATAAAAATAGCCAAGAGGCG
AGTTGTGATGGCATCCCTCTACTTGGGGACAGGACCTTTGGAACAGGAACTGGTGGATTGTCTGGAAAGT
TCTCTAGAAAAGTCACTCCAAGCGAAGTTTCCTTCCGACCTCAAGGTCTCCATTCTCCTGGACTTCACCA
GAGGCTCAAGAGGTAGGAAGAACTCTCGCACTATGCTGCTCCCACTCCTGCAGAGGTTTCCAGAGCGCGT
GCGCGTCTCCCTCTTCCACACACCAAACCTCCGAGGACTCCTCCGACTCCTTATCCCTGAGCGCTTCAAT
GAGACCATCGGCCTCCAGCACATCAAGGTGTACCTCTTTGACAACAACGTCATCCTGAGTGGTGCAAACC
TGAGTGACTCATACTTCACCAACCGCCAGGACCGCTACGTGTTCTTGCAGGACTGCGCTGAGATTGCCGA
CTTCTTCACAGAGCTGGTGGACGCCGTGGGGGATGTATCCTTGCAGTTGCAGGGCGACGACACAGTGGAG
GTTGTGGATGGGATGGTGCACCCTTACAAAGGTGACCGGGCTGCGTACTGCAGAGCAGCGAACAAGCGGG
TCATGGACGTCATCCACTCGGCCAGGGCCCGGCAGCAGATGCTGCACGCACAGACCTTTCACAGTGATTC
TCTGCTGAGCCAGGAAGAGGCTGCAGCTGCCGGGGACCGGAGGCCAGCGCCCGACACCTGGATTTACCCA
CTGATCCAGATGAAGCCCTTTGAGATTCAGATTGATGAGATAGTCACGGAGACGCTGCTGACGGAGGCTG
AGCGCGGAGCTAAGGTCTTCCTCACCACTGGCTACTTCAACCTGACCCAGGCCTACATGGACCTGGTGCT
AGGCACTCGAGCTGAGTATCAGATCCTTCTAGCCTCACCGGAGGTGAATGGCTTCTTTGGGGCTAAGGGC
GTGGCGGGCGCCATCCCAGCCGCCTATGTGCACATTGAGCGACAGTTCTACAGTGAGGTGTGTAGCCTGG
GGCAGCAGGATCGGGTCCAGCTCCAGGAATACTGGCGCAGGGGTTGGACCTTTCATGCCAAAGGCCTCTG
GCTGTACCTGGCAGGGAGCAGCCTGCCCTGCCTCACGCTGATTGGCTCTCCTAATTTTGGGTACAGGTCA
GTTCACCGGGACCTGGAAGCCCAGATTGCCATCGTGACGGAGAGCCGGTCCCTGCAGCAGCAGCTTCATC
AGGAGCAAGAGCAGCTCTACCTGCGGTCTGGTGTGGTGACCTCCGCAACCTTTGAGCAGCCAGGGCGGCA
GGTCAAGCTGTGGGTGAAGATGGTGACCCCGCTAATCAAGAACTTCTTCTGA

Translation (553 aa):
MAAPAAGPVFWRRLLGLLPGRPGLAALLGRLSDRLGRSRERRRRRSPWLLLAPLLSPTVPQVTSPPCCLC
PEGVHRFQWIRNLVPEFGVSSSHVRVLSSPAEFFELMKGQIKIAKRRVVMASLYLGTGPLEQELVDCLES
SLEKSLQAKFPSDLKVSILLDFTRGSRGRKNSRTMLLPLLQRFPERVRVSLFHTPNLRGLLRLLIPERFN
ETIGLQHIKVYLFDNNVILSGANLSDSYFTNRQDRYVFLQDCAEIADFFTELVDAVGDVSLQLQGDDTVE
VVDGMVHPYKGDRAAYCRAANKRVMDVIHSARARQQMLHAQTFHSDSLLSQEEAAAAGDRRPAPDTWIYP
LIQMKPFEIQIDEIVTETLLTEAERGAKVFLTTGYFNLTQAYMDLVLGTRAEYQILLASPEVNGFFGAKG
VAGAIPAAYVHIERQFYSEVCSLGQQDRVQLQEYWRRGWTFHAKGLWLYLAGSSLPCLTLIGSPNFGYRS
VHRDLEAQIAIVTESRSLQQQLHQEQEQLYLRSGVVTSATFEQPGRQVKLWVKMVTPLIKNFF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH