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Report for CCDS25761.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25761.1 Public Mus musculus 11 Slc16a3 23 108 98 CCDS HistoryNCBI Gene:80879Re-query CCDS DB by CCDS ID:25761.1Re-query CCDS DB by GeneID:80879See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25761.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070653.12 ENSMUSP00000068854.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070653.12Link to Ensembl Protein Viewer:ENSMUSP00000068854.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000070653Re-query CCDS DB by Protein ID:ENSMUSP00000068854
Original member Current member EBI ENSMUST00000100130.9 ENSMUSP00000097706.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100130.9Link to Ensembl Protein Viewer:ENSMUSP00000097706.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000100130Re-query CCDS DB by Protein ID:ENSMUSP00000097706
Original member Current member EBI ENSMUST00000168579.7 ENSMUSP00000125846.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168579.7Link to Ensembl Protein Viewer:ENSMUSP00000125846.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168579Re-query CCDS DB by Protein ID:ENSMUSP00000125846
Original member Current member NCBI NM_001038653.1 NP_001033742.1 Accepted alive Link to Nucleotide Sequence:NM_001038653.1Link to Protein Sequence:NP_001033742.1Re-query CCDS DB by Nucleotide ID:NM_001038653Re-query CCDS DB by Protein ID:NP_001033742Link to BLAST:NP_001033742.1
Original member Current member NCBI NM_001038654.1 NP_001033743.1 Accepted alive Link to Nucleotide Sequence:NM_001038654.1Link to Protein Sequence:NP_001033743.1Re-query CCDS DB by Nucleotide ID:NM_001038654Re-query CCDS DB by Protein ID:NP_001033743Link to BLAST:NP_001033743.1
Original member Current member NCBI NM_030696.3 NP_109621.1 Accepted alive Link to Nucleotide Sequence:NM_030696.3Link to Protein Sequence:NP_109621.1Re-query CCDS DB by Nucleotide ID:NM_030696Re-query CCDS DB by Protein ID:NP_109621Link to BLAST:NP_109621.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001033742.1 470 P57787 470 100% 0 0
NP_001033743.1 470 P57787 470 100% 0 0
NP_109621.1 470 P57787 470 100% 0 0

Chromosomal Locations for CCDS 25761.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 120955247 120955469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120955799 120955942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120956355 120957122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120957855 120958132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1413 nt):
ATGGGAGGGGCTGTGGTGGACGAGGGTCCCACCGGCATCAAGGCCCCCGATGGGGGCTGGGGCTGGGCCG
TCCTCTTTGGCTGTTTTATCATCACGGGTTTCTCCTACGCCTTCCCCAAGGCGGTCAGCGTCTTTTTCAA
GGAGCTTATGCATGAGTTTGGGATTGGCTACAGCGACACGGCTTGGATCTCCTCCATCCTGCTGGCTATG
CTCTATGGCACAGGACCGCTCTGCAGTGTGTGTGTGAACCGCTTTGGCTGCCGGCCTGTCATGCTTGTGG
GTGGCCTCTTTGCGTCCCTGGGAATGGTGGCTGCGTCCTTCTGCAGAAGCATTATCCAGATCTACCTCAC
CACGGGGGTCATCACTGGCTTGGGTCTGGCTCTCAACTTCCAGCCTTCCCTCATCATGCTCAATCGATAC
TTCAACAAGCGTCGCCCTATTGCCAATGGGTTGGCAGCGGCAGGCAGCCCAGTGTTCCTTTGTGCACTGT
CTCCACTGGGGCAGCTGCTGCAGGATCACTATGGTTGGCGGGGTGGCTTCCTCATCCTGGGGGGCCTACT
GCTCAACTGCTGTGTGTGTGCTGCGCTCATGAGGCCGCTGGTGGCACCGCAGGTAGGCGGAGGGACTGAG
CCCCGCGGACCCCAGCGGCCACCTCAACGCCTGCTAGACCTGAGTGTCTTCCGAGACCGCGGCTTCCTCA
TCTATGCCGTGGCCGCCTCAATCATGGTGCTGGGACTCTTTGTGCCTCCGGTCTTTGTGGTGAGCTATGC
TAAGGATATGGGTGTACCCGACACAAAGGCCGCCTTCCTTCTCACCATCCTGGGCTTCATCGACATCTTT
GCCAGGCCCACGGCTGGTTTCATAACAGGCCTCAAGAAGGTGCGGCCCTACTCTGTCTACCTCTTCAGCT
TTGCCATGTTCTTCAATGGCTTCACTGACCTGACAGGCTCCACAGCCACTGACTACGGTGGCCTGGTGGT
CTTTTGCATCTTCTTTGGCATCTCATATGGCATGGTGGGCGCACTACAGTTTGAGGTGCTCATGGCTATC
GTGGGCACTCAGAAGTTCTCCAGTGCCATTGGTCTCGTGCTGCTGCTGGAGGCCGTGGCTGTGCTCATCG
GACCCCCGTCAGGAGGCAAGCTGCTGGATGCAACCAAAGTTTACAAGTATGTGTTCATCCTGGCGGGGGC
CGAGGTGCTCACCTCCTCCCTTGTGCTGCTGCTGGGCAACTTCTTCTGCATCGGGAAGAGGAAGAGGCCC
GAGGTGACAGAGCCTGAGGAGGTGGCCTCAGAGGAGAAGCTCCACAAGCCCCCTGTGGACGTGGGAGTGG
ACTCGAGGGAGGTGGAGCACTTCCTGAAGGCAGAGCCTGAGAAAAATGGGGAGGTGGTTCATACCCCGGA
AACCAGCGTGTGA

Translation (470 aa):
MGGAVVDEGPTGIKAPDGGWGWAVLFGCFIITGFSYAFPKAVSVFFKELMHEFGIGYSDTAWISSILLAM
LYGTGPLCSVCVNRFGCRPVMLVGGLFASLGMVAASFCRSIIQIYLTTGVITGLGLALNFQPSLIMLNRY
FNKRRPIANGLAAAGSPVFLCALSPLGQLLQDHYGWRGGFLILGGLLLNCCVCAALMRPLVAPQVGGGTE
PRGPQRPPQRLLDLSVFRDRGFLIYAVAASIMVLGLFVPPVFVVSYAKDMGVPDTKAAFLLTILGFIDIF
ARPTAGFITGLKKVRPYSVYLFSFAMFFNGFTDLTGSTATDYGGLVVFCIFFGISYGMVGALQFEVLMAI
VGTQKFSSAIGLVLLLEAVAVLIGPPSGGKLLDATKVYKYVFILAGAEVLTSSLVLLLGNFFCIGKRKRP
EVTEPEEVASEEKLHKPPVDVGVDSREVEHFLKAEPEKNGEVVHTPETSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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