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Report for CCDS25798.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25798.1 Public Mus musculus 12 Ldah 23 108 98 CCDS HistoryNCBI Gene:68832Re-query CCDS DB by CCDS ID:25798.1Re-query CCDS DB by GeneID:68832See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25798.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037383.12 ENSMUSP00000042285.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037383.12Link to Ensembl Protein Viewer:ENSMUSP00000042285.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000037383Re-query CCDS DB by Protein ID:ENSMUSP00000042285
Original member Current member NCBI NM_001364260.1 NP_001351189.1 Accepted alive Link to Nucleotide Sequence:NM_001364260.1Link to Protein Sequence:NP_001351189.1Re-query CCDS DB by Nucleotide ID:NM_001364260Re-query CCDS DB by Protein ID:NP_001351189Link to BLAST:NP_001351189.1
Original member Current member NCBI NM_001364261.1 NP_001351190.1 Accepted alive Link to Nucleotide Sequence:NM_001364261.1Link to Protein Sequence:NP_001351190.1Re-query CCDS DB by Nucleotide ID:NM_001364261Re-query CCDS DB by Protein ID:NP_001351190Link to BLAST:NP_001351190.1
Original member Current member NCBI NM_172401.5 NP_765989.3 Accepted alive Link to Nucleotide Sequence:NM_172401.5Link to Protein Sequence:NP_765989.3Re-query CCDS DB by Nucleotide ID:NM_172401Re-query CCDS DB by Protein ID:NP_765989Link to BLAST:NP_765989.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001351189.1 326 Q8BVA5-1 326 99.6933% 0 1
NP_001351190.1 326 Q8BVA5-1 326 99.6933% 0 1
NP_765989.3 326 Q8BVA5-1 326 99.6933% 0 1

Chromosomal Locations for CCDS 25798.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 8220602 8220755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8227220 8227363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8238443 8238615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8268364 8268598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8275808 8275890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8283900 8284091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (981 nt):
ATGGCCTCAGAAGTCGAGGAACAAATCCCTGTGCGTGAGGAGTTCTTTCTCTGTGGTGGAGTTGAAACCA
AGATCATAAAATGTGGGCCCTGGACTAACCTCTTTGAGAAACAAGACGTCAGCAAGCCAAAACAGCTTAT
CTTCATCATTCCCGGTAACCCAGGCTATTCCGCATTCTACGTGCCATTTGCAAAGGCCTTGTACACTTTG
ATGAAGAGCCGCTTCCCGGTATGGATAATCTCTCATGCTGGGTTTTCGGTGACTCCCAAAGACAAGAAGG
TTCTTGCAGCACCACAGGAAGAGTCAAATGCTCAAAAAATTGAGGACGTCTATGGTCTGAATGGTCAAAT
AGAGCACAAAATAGCTTTTCTGAGAGCTCACGTGCCAAAGGATGTGAAGCTTATACTCATTGGCCATTCC
GTAGGCACCTATATGACCCTTCACGTGATGAAGCGAGTCCCCGAGCTGCCTGTCGCCCACGCCTTTCTGC
TCTTCCCAACTATCGAACGAATGTCTGAATCGCCCAACGGCAAGTTTGCCACTCCATTTTTGTGCCAGTT
TCGATACCTGCTCTATGCTACCAGCTACTTACTTTTTAAGCCGTGTCCTGAAGTCATAAAATCTTTCATA
ATCCAAAAGCTCATGGGACAAATGAACATTAAGCTTGAACTTCCTTTGACGGATATCCTTCAACCATTTT
GCCTTGCTAACGCTGCCTACCTCGGGAGCCAAGAAATGGTCCAGATAGTGAAGCGAGATGATGACATCAT
AAAGGAGTTTCTCCCTAAGCTTAAGTTTTACTATGGTAAAACTGATGGCTGGTGTCCAGTAAAGTACTAT
GAAGACATGAAGAAAGATTTTCCAGAAGGCAATATTTACCTCTGTGAGAAAGGAATACCACATGCTTTTG
TTCTCGATTTTAGCCAGGAGATGGCTACCATAGTTGCTGAGTGGATAAATAATAGACCGCCCAGAAAATA
G

Translation (326 aa):
MASEVEEQIPVREEFFLCGGVETKIIKCGPWTNLFEKQDVSKPKQLIFIIPGNPGYSAFYVPFAKALYTL
MKSRFPVWIISHAGFSVTPKDKKVLAAPQEESNAQKIEDVYGLNGQIEHKIAFLRAHVPKDVKLILIGHS
VGTYMTLHVMKRVPELPVAHAFLLFPTIERMSESPNGKFATPFLCQFRYLLYATSYLLFKPCPEVIKSFI
IQKLMGQMNIKLELPLTDILQPFCLANAAYLGSQEMVQIVKRDDDIIKEFLPKLKFYYGKTDGWCPVKYY
EDMKKDFPEGNIYLCEKGIPHAFVLDFSQEMATIVAEWINNRPPRK


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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