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Report for CCDS25862.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25862.2 Reviewed, update pending Mus musculus 12 Lamb1 23 108 98 CCDS HistoryNCBI Gene:16777Re-query CCDS DB by CCDS ID:25862.2Re-query CCDS DB by GeneID:16777See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 25862.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000169088.7 ENSMUSP00000132778.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169088.7Link to Ensembl Protein Viewer:ENSMUSP00000132778.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169088Re-query CCDS DB by Protein ID:ENSMUSP00000132778
Original member Current member NCBI NM_008482.3 NP_032508.3 Pending alive Link to Nucleotide Sequence:NM_008482.3Link to Protein Sequence:NP_032508.3Re-query CCDS DB by Nucleotide ID:NM_008482Re-query CCDS DB by Protein ID:NP_032508Link to BLAST:NP_032508.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032508.3 1786 P02469 1786 100% 0 0

Chromosomal Locations for CCDS 25862.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 31265565 31265601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31266691 31266866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31269057 31269192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31272430 31272503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31278462 31278650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31278736 31278799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31282557 31282759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31285626 31285746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31287416 31287604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31287879 31288058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31288203 31288315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31289342 31289421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31297626 31297761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31298813 31298971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31299924 31300051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31300207 31300330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31301006 31301210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31302562 31302705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31302904 31303135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31304590 31304753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31305767 31305991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31306975 31307189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31307950 31308046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31318264 31318633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31319919 31320103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31320898 31321139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31323462 31323665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31324176 31324320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31326170 31326377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31326568 31326709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31327645 31327821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31329110 31329269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31329357 31329493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5361 nt):
ATGGGGCTGCTCCAGGTGTTCGCCTTTGGTGTCCTAGCCCTATGGGGCACCCGAGTGTGCGCTCAGGAAC
CGGAGTTCAGCTATGGCTGCGCAGAAGGCAGCTGCTACCCTGCCACTGGCGACCTTCTCATCGGCCGAGC
GCAAAAGCTCTCCGTGACTTCGACATGTGGACTGCACAAACCAGAGCCCTACTGTATTGTTAGCCACCTG
CAGGAGGACAAGAAATGCTTCATATGTGACTCCCGAGACCCTTATCACGAGACCCTCAACCCCGACAGCC
ATCTCATTGAGAACGTGGTCACCACATTTGCTCCAAACCGCCTTAAGATCTGGTGGCAATCGGAAAATGG
TGTGGAGAACGTGACCATCCAACTGGACCTGGAAGCAGAATTCCATTTCACTCATCTCATCATGACCTTC
AAGACATTCCGCCCAGCCGCCATGCTGATCGAGCGGTCTTCTGACTTTGGGAAGGCTTGGGGCGTGTACA
GATACTTCGCCTACGACTGTGAGAGCTCGTTCCCAGGCATTTCAACTGGACCCATGAAGAAAGTGGATGA
CATCATCTGTGACTCTCGATATTCTGACATTGAGCCCTCGACAGAAGGAGAGGTAATATTTCGTGCTTTA
GATCCTGCTTTCAAAATTGAAGACCCTTATAGTCCAAGGATACAGAATCTATTAAAAATCACCAACTTGA
GAATCAAGTTTGTGAAACTGCACACCTTGGGGGATAACCTTTTGGACTCCAGAATGGAAATCCGAGAGAA
GTACTATTACGCTGTTTATGATATGGTGGTTCGAGGGAACTGCTTCTGCTATGGCCACGCCAGTGAATGC
GCCCCTGTGGATGGAGTCAATGAAGAAGTGGAAGGAATGGTTCACGGGCACTGCATGTGCAGACACAACA
CCAAAGGCCTGAACTGTGAGCTGTGCATGGATTTCTACCACGATTTGCCGTGGAGACCTGCTGAAGGCCG
GAACAGCAACGCCTGCAAAAAATGTAACTGCAATGAACATTCCAGCTCGTGTCACTTTGACATGGCAGTC
TTCCTGGCTACTGGCAACGTCAGCGGGGGAGTGTGTGATAACTGTCAGCACAACACCATGGGGCGCAACT
GTGAACAGTGCAAACCGTTCTACTTCCAGCACCCTGAGAGGGACATCCGGGACCCCAATCTCTGTGAACC
ATGTACCTGTGACCCAGCTGGTTCTGAGAATGGCGGGATCTGTGATGGGTACACTGATTTTTCTGTGGGT
CTCATTGCTGGTCAGTGTCGGTGCAAATTGCACGTGGAGGGAGAGCGCTGTGATGTTTGTAAAGAAGGCT
TCTACGACTTAAGTGCTGAAGACCCGTATGGTTGTAAATCATGTGCTTGCAATCCTCTGGGAACAATTCC
TGGTGGGAATCCTTGTGATTCTGAGACTGGCTACTGCTACTGTAAGCGCCTGGTGACAGGACAGCGCTGT
GACCAGTGCCTGCCGCAGCACTGGGGTTTAAGCAATGATTTGGATGGGTGTCGACCTTGTGACTGTGACC
TTGGAGGGGCGCTGAACAATAGCTGCTCCGAGGACTCCGGCCAGTGCTCCTGCCTGCCCCACATGATTGG
GCGGCAGTGTAACGAGGTGGAGTCCGGTTACTACTTCACCACCCTGGACCACTACATCTACGAAGCCGAG
GAAGCCAATCTGGGGCCTGGAGTCATTGTGGTGGAAAGGCAGTACATTCAGGACCGCATTCCTTCCTGGA
CAGGACCTGGGTTCGTCCGGGTGCCTGAAGGGGCTTATTTGGAGTTTTTCATTGACAACATACCGTATTC
CATGGAGTATGAAATCCTGATTCGCTATGAGCCACAGCTGCCGGACCACTGGGAGAAAGCTGTCATCACT
GTACAGCGGCCGGGGAAGATTCCAGCCAGCAGCCGATGTGGTAACACCGTTCCCGATGATGACAACCAGG
TGGTGTCCTTGTCACCGGGCTCAAGATACGTTGTCCTCCCTCGCCCCGTGTGCTTTGAGAAGGGAATGAA
CTACACGGTGAGGTTGGAGCTGCCCCAGTATACGGCATCGGGCAGTGACGTGGAGAGCCCTTACACGTTC
ATCGACTCGCTTGTTCTCATGCCCTACTGTAAATCGCTGGACATCTTCACTGTTGGCGGCTCAGGCGATG
GGGAGGTCACCAATAGTGCCTGGGAAACCTTCCAGCGCTACAGGTGTCTGGAGAACAGCAGGAGTGTGGT
AAAAACACCCATGACAGATGTCTGCAGAAACATTATCTTCAGCATTTCTGCCTTGATTCACCAGACGGGC
CTTGCTTGTGAATGTGACCCCCAGGGATCTCTGAGTTCTGTGTGTGACCCCAATGGTGGCCAGTGCCAGT
GCCGTCCTAATGTGGTTGGAAGAACCTGCAACAGGTGTGCCCCGGGCACCTTTGGCTTTGGCCCCAACGG
ATGCAAACCTTGTGACTGCCATCTGCAAGGGTCTGCCAGTGCCTTCTGCGATGCGATCACTGGCCAGTGC
CACTGTTTCCAGGGCATCTATGCTCGGCAGTGTGACCGATGTCTCCCTGGGTATTGGGGCTTTCCCAGCT
GCCAGCCCTGCCAGTGTAATGGTCATGCTCTAGACTGTGACACAGTGACAGGGGAGTGTCTGAGCTGTCA
GGACTACACCACGGGCCACAACTGCGAAAGGTGCCTGGCTGGCTACTACGGTGATCCCATCATTGGGTCA
GGAGACCACTGTCGCCCTTGCCCTTGTCCTGATGGTCCTGACAGTGGACGACAGTTTGCCAGGAGCTGTT
ATCAAGACCCCGTCACTCTCCAGCTTGCGTGTGTTTGTGATCCTGGGTACATTGGCTCCAGATGTGATGA
CTGTGCCTCTGGATTTTTTGGCAATCCCTCAGACTTTGGGGGTTCATGTCAACCATGTCAGTGCCACCAC
AACATTGACACTACCGATCCAGAAGCCTGTGACAAGGAGACGGGACGATGCCTCAAGTGCCTGTACCACA
CAGAAGGGGACCATTGCCAGCTCTGCCAGTATGGGTACTACGGCGATGCTCTTCGGCAAGACTGTAGAAA
GTGTGTCTGCAATTACCTGGGCACGGTGAAGGAACATTGTAATGGCTCTGACTGCCACTGTGACAAAGCC
ACTGGTCAGTGCTCGTGCCTTCCCAATGTGATCGGGCAGAACTGTGACCGGTGTGCGCCCAACACCTGGC
AGCTGGCTAGCGGGACTGGCTGCGGGCCCTGCAATTGCAATGCTGCGCATTCCTTTGGGCCATCCTGCAA
CGAGTTCACAGGGCAGTGCCAGTGCATGCCGGGCTTTGGAGGCCGAACCTGCAGCGAGTGCCAGGAGCTC
TTCTGGGGAGACCCTGATGTGGAATGCCGAGCCTGTGACTGTGATCCCAGGGGCATTGAGACACCTCAGT
GTGACCAGTCCACGGGCCAGTGTGTCTGTGTGGAGGGTGTAGAGGGTCCTCGCTGCGACAAGTGCACCAG
AGGTTACTCGGGGGTCTTTCCTGACTGCACACCCTGCCACCAGTGCTTTGCTCTCTGGGATGCTATCATT
GGTGAGCTGACCAACAGGACCCACAAATTCCTGGAGAAAGCCAAGGCTCTGAAAATCAGTGGTGTGATTG
GTCCCTACCGAGAGACCGTGGACTCTGTAGAGAAGAAAGTCAATGAGATAAAAGACATCCTGGCCCAGAG
CCCAGCAGCGGAACCACTGAAAAACATTGGCATTCTCTTCGAGGAGGCAGAGAAACTAACCAAAGATGTC
ACAGAAAAGATGGCGCAGGTAGAAGTGAAATTAACTGATACAGCTTCACAGAGTAACAGCACAGCTGGAG
AGCTCGGCGCACTGCAGGCAGAAGCAGAGAGCCTTGACAAGACCGTGAAGGAGCTGGCAGAACAGCTGGA
GTTTATCAAAAACTCCGATATTCAGGGCGCCTTGGATAGCATCACCAAGTATTTCCAGATGTCTCTTGAG
GCAGAGAAGCGGGTGAATGCCTCCACCACAGACCCCAACAGCACTGTGGAGCAGTCTGCCCTCACGCGAG
ACAGAGTAGAAGATCTGATGTTGGAGCGAGAGTCTCCGTTCAAGGAGCAGCAGGAGGAACAGGCACGCCT
CCTGGACGAACTGGCCGGCAAACTGCAAAGTCTCGACCTGTCGGCTGTTGCACAGATGACCTGTGGAACA
CCTCCAGGGGCTGACTGTTCTGAAAGTGAATGTGGTGGCCCCAACTGCAGAACTGACGAAGGAGAGAAGA
AGTGTGGGGGGCCTGGCTGTGGTGGTCTGGTCACTGTGGCCCACAGTGCTTGGCAGAAAGCCATGGATTT
TGACCGTGATGTCCTGAGTGCCCTGGCTGAAGTCGAACAGCTCTCCAAGATGGTCTCTGAAGCAAAAGTG
AGAGCAGATGAGGCGAAGCAGAATGCGCAGGATGTCCTGTTAAAAACAAATGCTACCAAAGAAAAAGTGG
ACAAGAGCAACGAGGACCTGCGGAACCTCATCAAGCAGATCAGAAACTTCCTGACTGAGGATAGTGCTGA
TCTAGACAGTATTGAAGCAGTTGCTAATGAAGTACTGAAAATGGAAATGCCTAGCACGCCACAGCAGTTA
CAGAACCTAACAGAAGACATTCGGGAGCGAGTTGAAACCCTCTCTCAAGTAGAGGTTATTTTGCAGCAGA
GTGCAGCTGACATTGCCAGAGCTGAGCTGTTGCTTGAGGAAGCTAAGAGAGCAAGCAAAAGTGCAACAGA
TGTTAAAGTCACTGCAGACATGGTGAAGGAAGCATTAGAAGAAGCAGAAAAGGCCCAGGTTGCAGCAGAG
AAGGCGATTAAACAAGCTGATGAGGATATCCAAGGAACCCAAAACCTGCTAACATCGATTGAATCTGAAA
CGGCAGCTTCTGAGGAAACCCTGACCAACGCCTCCCAGCGCATCAGCAAGCTTGAGAGGAACGTGGAAGA
GCTTAAGCGTAAAGCTGCCCAGAACTCTGGGGAGGCAGAATATATCGAAAAAGTAGTATATTCTGTAAAA
CAGAATGCAGACGATGTTAAGAAGACTCTAGATGGCGAACTTGATGAAAAGTATAAGAAGGTAGAAAGTT
TAATTGCCCAAAAAACTGAAGAGTCAGCAGATGCCAGGAGGAAAGCTGAGCTGCTACAAAATGAAGCAAA
AACACTCTTGGCTCAAGCTAACAGCAAGCTCCAGCTGTTGGAAGACTTAGAAAGAAAATATGAGGACAAT
CAAAAATACTTAGAAGATAAAGCTCAAGAATTGGTGCGACTGGAAGGAGAGGTTCGCTCCCTCCTTAAGG
ACATAAGTGAGAAAGTTGCGGTTTACAGCACCTGCTTATAA

Translation (1786 aa):
MGLLQVFAFGVLALWGTRVCAQEPEFSYGCAEGSCYPATGDLLIGRAQKLSVTSTCGLHKPEPYCIVSHL
QEDKKCFICDSRDPYHETLNPDSHLIENVVTTFAPNRLKIWWQSENGVENVTIQLDLEAEFHFTHLIMTF
KTFRPAAMLIERSSDFGKAWGVYRYFAYDCESSFPGISTGPMKKVDDIICDSRYSDIEPSTEGEVIFRAL
DPAFKIEDPYSPRIQNLLKITNLRIKFVKLHTLGDNLLDSRMEIREKYYYAVYDMVVRGNCFCYGHASEC
APVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCNEHSSSCHFDMAV
FLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEPCTCDPAGSENGGICDGYTDFSVG
LIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRC
DQCLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSGQCSCLPHMIGRQCNEVESGYYFTTLDHYIYEAE
EANLGPGVIVVERQYIQDRIPSWTGPGFVRVPEGAYLEFFIDNIPYSMEYEILIRYEPQLPDHWEKAVIT
VQRPGKIPASSRCGNTVPDDDNQVVSLSPGSRYVVLPRPVCFEKGMNYTVRLELPQYTASGSDVESPYTF
IDSLVLMPYCKSLDIFTVGGSGDGEVTNSAWETFQRYRCLENSRSVVKTPMTDVCRNIIFSISALIHQTG
LACECDPQGSLSSVCDPNGGQCQCRPNVVGRTCNRCAPGTFGFGPNGCKPCDCHLQGSASAFCDAITGQC
HCFQGIYARQCDRCLPGYWGFPSCQPCQCNGHALDCDTVTGECLSCQDYTTGHNCERCLAGYYGDPIIGS
GDHCRPCPCPDGPDSGRQFARSCYQDPVTLQLACVCDPGYIGSRCDDCASGFFGNPSDFGGSCQPCQCHH
NIDTTDPEACDKETGRCLKCLYHTEGDHCQLCQYGYYGDALRQDCRKCVCNYLGTVKEHCNGSDCHCDKA
TGQCSCLPNVIGQNCDRCAPNTWQLASGTGCGPCNCNAAHSFGPSCNEFTGQCQCMPGFGGRTCSECQEL
FWGDPDVECRACDCDPRGIETPQCDQSTGQCVCVEGVEGPRCDKCTRGYSGVFPDCTPCHQCFALWDAII
GELTNRTHKFLEKAKALKISGVIGPYRETVDSVEKKVNEIKDILAQSPAAEPLKNIGILFEEAEKLTKDV
TEKMAQVEVKLTDTASQSNSTAGELGALQAEAESLDKTVKELAEQLEFIKNSDIQGALDSITKYFQMSLE
AEKRVNASTTDPNSTVEQSALTRDRVEDLMLERESPFKEQQEEQARLLDELAGKLQSLDLSAVAQMTCGT
PPGADCSESECGGPNCRTDEGEKKCGGPGCGGLVTVAHSAWQKAMDFDRDVLSALAEVEQLSKMVSEAKV
RADEAKQNAQDVLLKTNATKEKVDKSNEDLRNLIKQIRNFLTEDSADLDSIEAVANEVLKMEMPSTPQQL
QNLTEDIRERVETLSQVEVILQQSAADIARAELLLEEAKRASKSATDVKVTADMVKEALEEAEKAQVAAE
KAIKQADEDIQGTQNLLTSIESETAASEETLTNASQRISKLERNVEELKRKAAQNSGEAEYIEKVVYSVK
QNADDVKKTLDGELDEKYKKVESLIAQKTEESADARRKAELLQNEAKTLLAQANSKLQLLEDLERKYEDN
QKYLEDKAQELVRLEGEVRSLLKDISEKVAVYSTCL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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