NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25865.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25865.1 Public Mus musculus 12 Dus4l 23 108 98 CCDS HistoryNCBI Gene:71916Re-query CCDS DB by CCDS ID:25865.1Re-query CCDS DB by GeneID:71916See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25865.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020977.3 ENSMUSP00000020977.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020977.3Link to Ensembl Protein Viewer:ENSMUSP00000020977.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000020977Re-query CCDS DB by Protein ID:ENSMUSP00000020977
Original member NCBI NM_028002.2 NP_082278.1 Updated not alive Link to Nucleotide Sequence:NM_028002.2Link to Protein Sequence:NP_082278.1Re-query CCDS DB by Nucleotide ID:NM_028002Re-query CCDS DB by Protein ID:NP_082278
Current member NCBI NM_028002.3 NP_082278.1 Accepted alive Link to Nucleotide Sequence:NM_028002.3Link to Protein Sequence:NP_082278.1Re-query CCDS DB by Nucleotide ID:NM_028002Re-query CCDS DB by Protein ID:NP_082278Link to BLAST:NP_082278.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082278.1 324 Q32M08 324 99.6914% 0 1

Chromosomal Locations for CCDS 25865.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 31640676 31640944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31641502 31641728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31642764 31642886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31646621 31646738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31648766 31648887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31652291 31652406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (975 nt):
ATGAGAAGTGACTCCTTACCAACCACAATATGTCAAGAAAGAAAAAAAGACCCGATAGAAATGTTTCATT
CTGGACAGCTGGTAAAAGTCTGTGCCCCGATGGTTCGATATTCAAAGTTAGCTTTTAGAACATTAGTAAG
AAAATACTCTTGTGACCTGTGTTACACACCAATGATAATTGCTGCTGATTTTGTCAGATCTATAAAAGCC
AGAGACAGTGAATTTACCACAAACCAAGGTGATTGCCCGTTGATTGTTCAGTTTGCTGCTAATGATGCAA
GACTTTTATCTGATGCTGCCCTGCTAGTCTGTCCCTATGCAAATGGAATAGATATTAACTGTGGTTGCCC
TCAGAGGTGGGCGATGGCGGACGGTTATGGAGCTTGCTTGATCAACAAGCCAGAGCTTGTTCACGATATG
GTGAGACAAGTGAGAAATCGGGTGGAAAGCCCAAGGTTTTCAGTTTCCATTAAGATAAGGATCCACGATG
ACCTGGCAAGAACCATAGATCTTTGCCGGAAGGCTGAAGCAACAGGAGTGTCCTGGATTACAGTTCATGG
AAGGACAGTTGAAGAAAGACACCAGCCAGTCCACTACGATGCCATTAAAATGATAAAGGAAAATGTGTCT
ATACCCATAGTTGCTAATGGAGACATAAGAAGCTTAAAAGAAGCAGAAAATGTGTGGCAGATGACTGGGA
CAGATGGTGTGATGGTTGCAAGAGGACTTTTAACAAACCCAGCTATGTTTGCTGGATATGAAGAAACCCC
ACTGAAATGTATCTGGGACTGGGTTGACATCTCTCTTGAACTTGGAACTCCTTTTATGTGCTTCCATCAG
CATCTGATGTACATGATGGAAAAGATAACGTCAAGGCAGGAGAAGAGAGTATTTAATGCCTTGTCAAGCA
CATCAGCAGTCCTGGACTACCTTACGGACCATTATGGTGATGAGTCGCTTTCTAAATCTTTGTAG

Translation (324 aa):
MRSDSLPTTICQERKKDPIEMFHSGQLVKVCAPMVRYSKLAFRTLVRKYSCDLCYTPMIIAADFVRSIKA
RDSEFTTNQGDCPLIVQFAANDARLLSDAALLVCPYANGIDINCGCPQRWAMADGYGACLINKPELVHDM
VRQVRNRVESPRFSVSIKIRIHDDLARTIDLCRKAEATGVSWITVHGRTVEERHQPVHYDAIKMIKENVS
IPIVANGDIRSLKEAENVWQMTGTDGVMVARGLLTNPAMFAGYEETPLKCIWDWVDISLELGTPFMCFHQ
HLMYMMEKITSRQEKRVFNALSSTSAVLDYLTDHYGDESLSKSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH