NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25866.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25866.3 Public Mus musculus 12 Gpr22 23 108 98 CCDS HistoryNCBI Gene:73010Re-query CCDS DB by CCDS ID:25866.3Re-query CCDS DB by GeneID:73010See the combined annotation on chromosome 12 in Sequence Viewer

Public Note for CCDS 25866.2
The coding region has been updated to start at a downstream in-frame start codon that is supported by conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 25866.3

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057783.5 ENSMUSP00000056125.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057783.5Link to Ensembl Protein Viewer:ENSMUSP00000056125.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000057783Re-query CCDS DB by Protein ID:ENSMUSP00000056125
Original member Current member EBI ENSMUST00000176710.1 ENSMUSP00000134839.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000176710.1Link to Ensembl Protein Viewer:ENSMUSP00000134839.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000176710Re-query CCDS DB by Protein ID:ENSMUSP00000134839
Original member Current member NCBI NM_175191.5 NP_780400.3 Accepted alive Link to Nucleotide Sequence:NM_175191.5Link to Protein Sequence:NP_780400.3Re-query CCDS DB by Nucleotide ID:NM_175191Re-query CCDS DB by Protein ID:NP_780400Link to BLAST:NP_780400.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780400.3 432 Q8BZL4 432 100% 0 0

Chromosomal Locations for CCDS 25866.3

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 31708712 31710010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1299 nt):
ATGTGTTTTTCTCCTGTTCTGGAAATCAACATGCAGTCTGAATCAAACGTCACGGTGCGAGATGACATTG
ATGACATCGACACCAATATGTACCAACCACTGTCATACCCACTAAGCTTTCAAGTGTCTCTCACTGGATT
TCTCATGTTAGAGATCGTGCTGGGGCTTGGCAGCAACCTTACCGTCCTGGTACTTTACTGCATGAAATCC
AACTTAATCAACTCTGTCAGTAACATTATTACAATGAACCTCCATGTACTTGATGTCATAATTTGTGTGG
GATGCATTCCTCTAACTATAGTGATCCTTCTGCTCTCACTGGAGAGTAACACTGCTCTCATCTGCTGTTT
CCACGAAGCTTGTGTTTCCTTTGCAAGTGTTTCGACAGCAATCAACGTTTTTGCTATTACTCTGGACAGA
TATGACATCTCTGTAAAACCTGCAAACAGAATTCTGACAATGGGCAGAGCTGTAATGCTAATGACATCCA
TTTGGATTTTTTCTTTCTTCTCATTCCTGATTCCCTTCATTGAAGTAAATTTTTTCAGTCTTCAAAGTGG
AAATACATGGGCAAACAAGACACTGCTGTGTGTCAGTACAAGTGAATACTATACTGAGCTCGGGATGTAC
TATCACCTTTTGGTGCAGATCCCCATCTTCTTCTTCACAGTTATAGTCATGTTGATCACATACACTAAGA
TACTCCAGGCTCTTAACATCCGCATAGGCACTAGATTCTCAACAGGACAGAAGAAGAAAGCCCGAAAGAA
AAAGACAATCTCTCTAGCTACACATGAGACCACAGACATGTCACAAAGCAGTGGTGGGAGGAATGTCGTG
TTTGGTGTGAGAACTTCAGTTTCTGTAATAATTGCCCTCCGGCGAGCCGTGAAACGCCACCGGGAACGAC
GAGAACGGCAGAAAAGAGTCTTCAAAATGTCGTTATTGATTATTTCTACATTTCTTCTCTGTTGGACACC
AATTTCTGTTTTAAATACCACCATTCTATGTTTAGGCCCAAGTGACCTTTTAGTAAAATTAAGATTGTGT
TTTCTAGTCATGGCTTATGGAACAACGATATTCCACCCTCTCTTGTATGCATTCACCAGACAAAAGTTTC
AAAAGGTCTTAAAGAGTAAGATGAAAAAGCGAGTTGTTTCCATAGTTGAAGCTGATCCCATGCCTAATAA
CGCTGTAATACACAACTCATGGATAGATCCTAAAAGAAACAAAAAGGTTACCTATGAAGACAGTGAAATA
AGAGAGAAATGTTTAGTACCTCAGGTTGTCACAGACTAG

Translation (432 aa):
MCFSPVLEINMQSESNVTVRDDIDDIDTNMYQPLSYPLSFQVSLTGFLMLEIVLGLGSNLTVLVLYCMKS
NLINSVSNIITMNLHVLDVIICVGCIPLTIVILLLSLESNTALICCFHEACVSFASVSTAINVFAITLDR
YDISVKPANRILTMGRAVMLMTSIWIFSFFSFLIPFIEVNFFSLQSGNTWANKTLLCVSTSEYYTELGMY
YHLLVQIPIFFFTVIVMLITYTKILQALNIRIGTRFSTGQKKKARKKKTISLATHETTDMSQSSGGRNVV
FGVRTSVSVIIALRRAVKRHRERRERQKRVFKMSLLIISTFLLCWTPISVLNTTILCLGPSDLLVKLRLC
FLVMAYGTTIFHPLLYAFTRQKFQKVLKSKMKKRVVSIVEADPMPNNAVIHNSWIDPKRNKKVTYEDSEI
REKCLVPQVVTD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH