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Report for CCDS25889.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
25889.1 |
Public |
Mus musculus |
12 |
Dgkb |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:217480](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:25889.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:217480](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 12 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 25889.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000040500.8 |
ENSMUSP00000037900.7 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000040500.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000037900.7](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000040500](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000037900](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000220990.1 |
ENSMUSP00000152378.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000220990.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000152378.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000220990](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000152378](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001361688.1 |
NP_001348617.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001361688.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001348617.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001361688](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001348617](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001348617.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_178681.5 |
NP_848796.2 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_178681.5](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_848796.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_178681](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_848796](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_848796.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 25889.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2388 nt): ATGACAAACCAGGAAAAATGGGCCCATCTCAGCCCCTCAGAATTTTCCCAACTTCAGAAATATGCTGAGT ATTCTACAAAGAAATTAAAGGATGTTCTTGAAGAATTCCATGGTAATGGCGTGCTTGCAAAGTATAATCC TGAAGGGACCATAGATTTTGAAGGCTTCAAGCTATTCATGAAGACCTTTCTGGAAGCTGAGCTGCCTGAC GATTTCACCGCCCACCTTTTTATGTCATTCAGCAACAAATTTCCCCATTCTAGCCCAAATGTAAAGAGTA AGCCCGCTCTTCTTTCAGGTGGTCTCAGGATGAATAAGGGTGCCATCACCCCTCCACGTTCCTCTCCAGC AAATACATGCTCCCCAGAAGTGATCCACCTCAAGGATATCGTCTGCTACCTGTCTCTTCTCGAAAGAGGA AGACCCGAGGATAAGCTCGAGTTTATGTTTCGCCTTTATGACACCGATGGGAATGGCTTCCTGGACAGCT CGGAATTAGAAAATATTATTGGTCAGATGATGCACGTGGCAGAGTACCTCGAATGGGATGTTACCGAACT TAATCCGATCCTTCATGAAATGATGGAAGAAATTGACTATGACCGGGATGGCACTGTGTCTCTGGAGGAG TGGATTCAAGGAGGAATGACAACTATCCCACTTCTAGTCCTGCTGGGCTTGGAGAATAATGTGAAGGATG ATGGACAGCATGTGTGGCGACTCAAGCACTTTAACAAGCCTGCCTACTGCAATCTCTGCCTGAACATGCT GATTGGCGTGGGGAAGCAGGGCCTCTGCTGCTCCTTCTGCAAGTACACGGTCCATGAGCGCTGTGTGGCC AGAGCCCCGCCCTCCTGCATCAAGACATATGTGAAGTCCAAGAAAAACACAGACGTCATGCACCACTATT GGGTCGAAGGCAATTGCCCAACCAAGTGCGATAAGTGCCACAAAACAGTGAAATGTTACCAGGGCCTGAC GGGCCTGCATTGTGTTTGGTGCCAGACCACACTGCACAATAAATGTGCTTCTCATCTGAAGCCCGAGTGT GACTGTGGACCCTTGAAGGACCATATTTTGCCACCTACCACAATCTGTCCAGTTGTATTGACTATGCCCA GTGCTGGAGCCTCAGTTCCTGAGGAAAGACAGTCCACAGCTAAAAAGGAAAAGAGCAGCTCCCAGCAGCC AAATAAAGCAACAGACAAAAATAAAATGCAAAGAGCTAACTCAGTTACTATGGATGGACAAGGTTTGCAG ATCACTCCTGTTCCTGGCACACATCCGCTTCTAGTTTTTGTCAACCCTAAAAGTGGTGGGAAGCAAGGAG AACGAATTTACAGAAAATTCCAGTATCTCCTAAATCCTCGTCAGGTTTACAGTCTTTCTGGAAATGGACC AATGCCAGGGTTACACTTTTTTCGCGATGTCCCTGACTTCAGAGTGTTAGCATGCGGTGGAGATGGGACT GTGGGCTGGATTTTGGATTGCATAGAGAAGGCCAATGTAGTCAAGCACCCTCCAGTTGCCATCCTGCCTC TTGGGACTGGCAATGACTTAGCAAGGTGCCTGCGGTGGGGTGGAGGTTATGAAGGGGAAAATCTTATGAA GATCCTAAAAGACATTGAAAGCAGCACAGAAATCATGCTGGACAGGTGGAAGTTTGAAGTCACACCCAAC GACAAAGATGAGAAAGGAGACCCTGTGCCTTACAGCATCATCAATAACTACTTTTCCATTGGCGTGGATG CCTCCATTGCACACAGATTCCACATCATGAGAGAAAAGCACCCAGAGAAATTCAACAGCCGAATGAAGAA CAAATTTTGGTACTTTGAGTTTGGCACATCTGAAACCTTCTCAGCGACCTGCAAGAAGCTGCATGAATCT GTAGAAATAGAATGTGATGGAGTACAAATAGATTTGATAAACATCTCTCTGGAAGGAATTGCAATTTTGA ATATACCAAGCATGCATGGAGGATCTAATCTTTGGGGAGAGTCTAAAAAGAAAAGAAGCCATCGACGAAT AGAGAAAAAAGGCTCTGACAAAAGACCCACTCTCACAGATGCAAAAGAGCTGAAGTTTGCAAGTCAAGAT CTGAGTGACCAGCTGCTGGAGGTCGTTGGCTTGGAAGGAGCAATGGAAATGGGCCAAATTTACACGGGCC TGAAAAGTGCGGGCCGGCGGCTGGCTCAGTGCTCCTCTGTGGTTATCAGAACAAGCAAGTCACTGCCAAT GCAGATTGATGGAGAGCCCTGGATGCAGACCCCATGCACAATAAAAATTACACACAAGAACCAAGCCCCA ATGCTGATGGGCCCTCCACCCAAAACTGGATTATTCTGCTCACTTATCAAAAGAACAAGAAACCGAAGCA AGGAGTGA
Translation (795 aa): MTNQEKWAHLSPSEFSQLQKYAEYSTKKLKDVLEEFHGNGVLAKYNPEGTIDFEGFKLFMKTFLEAELPD DFTAHLFMSFSNKFPHSSPNVKSKPALLSGGLRMNKGAITPPRSSPANTCSPEVIHLKDIVCYLSLLERG RPEDKLEFMFRLYDTDGNGFLDSSELENIIGQMMHVAEYLEWDVTELNPILHEMMEEIDYDRDGTVSLEE WIQGGMTTIPLLVLLGLENNVKDDGQHVWRLKHFNKPAYCNLCLNMLIGVGKQGLCCSFCKYTVHERCVA RAPPSCIKTYVKSKKNTDVMHHYWVEGNCPTKCDKCHKTVKCYQGLTGLHCVWCQTTLHNKCASHLKPEC DCGPLKDHILPPTTICPVVLTMPSAGASVPEERQSTAKKEKSSSQQPNKATDKNKMQRANSVTMDGQGLQ ITPVPGTHPLLVFVNPKSGGKQGERIYRKFQYLLNPRQVYSLSGNGPMPGLHFFRDVPDFRVLACGGDGT VGWILDCIEKANVVKHPPVAILPLGTGNDLARCLRWGGGYEGENLMKILKDIESSTEIMLDRWKFEVTPN DKDEKGDPVPYSIINNYFSIGVDASIAHRFHIMREKHPEKFNSRMKNKFWYFEFGTSETFSATCKKLHES VEIECDGVQIDLINISLEGIAILNIPSMHGGSNLWGESKKKRSHRRIEKKGSDKRPTLTDAKELKFASQD LSDQLLEVVGLEGAMEMGQIYTGLKSAGRRLAQCSSVVIRTSKSLPMQIDGEPWMQTPCTIKITHKNQAP MLMGPPPKTGLFCSLIKRTRNRSKE
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